Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30398
         (719 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   2.9  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    23   2.9  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             23   2.9  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   3.8  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   5.1  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    22   6.7  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    22   6.7  
X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.    21   8.9  
EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2 prot...    21   8.9  
AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2 prot...    21   8.9  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    21   8.9  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +3

Query: 132 STSRSRNGASSTLSPFGCKHRAEGRCHGRPSRCTWQWSQESL 257
           S S+S+  + S++S    +  + G C  RPS  T+  S E+L
Sbjct: 22  SNSQSQRSSGSSISRNSNRSESSGYCGRRPS--TFGSSNEAL 61


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +1

Query: 241 GVRNHLFTTSLSSELVTSRVM 303
           G+ N L  T+LSS LV SRV+
Sbjct: 608 GLGNSLAITALSSILVLSRVI 628


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +3

Query: 132 STSRSRNGASSTLSPFGCKHRAEGRCHGRPSRCTWQWSQESL 257
           S S+S+  + S++S    +  + G C  RPS  T+  S E+L
Sbjct: 22  SNSQSQRSSGSSISRNSNRSESSGYCGRRPS--TFGSSNEAL 61


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +2

Query: 560 LNLRKDLSASVSACRSARE 616
           LNLR D+S+S S+  S+ E
Sbjct: 365 LNLRTDISSSSSSISSSEE 383


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 9/27 (33%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
 Frame = -2

Query: 718 SVYVQQEASRHH--ACQPYPGNENCFG 644
           S+Y+QQ+  +HH  +   +  N+  FG
Sbjct: 96  SLYLQQQQQQHHQDSSSEHASNQERFG 122


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +1

Query: 202 VDAMAGLLDVLGNGVRNHLFTTSLS 276
           V  M G + V+GNG+  ++F ++ S
Sbjct: 24  VIGMLGFVSVMGNGMVVYIFLSTKS 48


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = +3

Query: 234 WQWSQESLVHHLPEF 278
           WQW++E   ++L +F
Sbjct: 173 WQWNEERKQYYLHQF 187


>X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.
          Length = 162

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +3

Query: 180 GCKHRAEGRC 209
           GC  R EGRC
Sbjct: 132 GCGERTEGRC 141


>EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +3

Query: 180 GCKHRAEGRC 209
           GC  R EGRC
Sbjct: 137 GCGERTEGRC 146


>AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +3

Query: 180 GCKHRAEGRC 209
           GC  R EGRC
Sbjct: 137 GCGERTEGRC 146


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +3

Query: 216 RPSRCTWQWSQESLVH 263
           RPS CTW+ +  +  H
Sbjct: 8   RPSYCTWELNATNSPH 23


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,253
Number of Sequences: 438
Number of extensions: 4068
Number of successful extensions: 17
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22292145
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)