Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30398
         (719 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g04840.1 68416.m00525 40S ribosomal protein S3A (RPS3aA) simi...   132   3e-31
At4g34670.1 68417.m04922 40S ribosomal protein S3A (RPS3aB)           113   1e-25
At3g17380.1 68416.m02221 meprin and TRAF homology domain-contain...    30   1.3  
At1g27170.1 68414.m03310 disease resistance protein (TIR-NBS-LRR...    28   7.2  

>At3g04840.1 68416.m00525 40S ribosomal protein S3A (RPS3aA) similar
           to 40S ribosomal protein S3A (S phase specific protein
           GBIS289) GB:P49396 [Brassica rapa]
          Length = 262

 Score =  132 bits (318), Expect = 3e-31
 Identities = 85/201 (42%), Positives = 118/201 (58%), Gaps = 2/201 (0%)
 Frame = -3

Query: 717 PSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQ 538
           PS+F+ R VG TLV+RTQGTKIASEGLK RVFEVSLADLQ D D   ++RK RL AE VQ
Sbjct: 35  PSIFTHRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQGDED--NAYRKIRLRAEDVQ 92

Query: 537 GRNVLCNFHGWTSQPISSGGWLKNGRLSSKPTLM*RQPMDTFYVSSALVSPIRTP*ANAR 358
           GRNVLC F G           +K  +   +  +   +  D++ +    ++  +      +
Sbjct: 93  GRNVLCQFWGMDFTTDKLRSLVKKWQTLIEAHVD-VKTTDSYTLRLFCIAFTKRRANQVK 151

Query: 357 RVRPAHSGQSNQ-KENV*NHYTRR-H*L*TQGGGEQVIPDSIAKYIEKACHGIYPLRDVC 184
           R   A S Q  Q +  + +   R       +    + IP++I + IEKA  GIYPL++V 
Sbjct: 152 RTCYAQSSQIRQIRRKMRDIMVREASSCDLKDLVAKFIPEAIGREIEKATQGIYPLQNVF 211

Query: 183 IRKVKVLKRPRFEISKLMELH 121
           IRKVK+LK P+F++ KLM++H
Sbjct: 212 IRKVKILKAPKFDLGKLMDVH 232



 Score = 83.0 bits (196), Expect = 2e-16
 Identities = 37/65 (56%), Positives = 47/65 (72%)
 Frame = -2

Query: 508 MDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCTPSTLRSE 329
           MD TTDKLR +VKKWQTLIEA++DVKTTD Y LR+FCI FT + +   ++TC   + +  
Sbjct: 103 MDFTTDKLRSLVKKWQTLIEAHVDVKTTDSYTLRLFCIAFTKRRANQVKRTCYAQSSQIR 162

Query: 328 QSERK 314
           Q  RK
Sbjct: 163 QIRRK 167



 Score = 35.9 bits (79), Expect = 0.027
 Identities = 14/33 (42%), Positives = 26/33 (78%)
 Frame = -1

Query: 353 YAQHTQVRAIRKKMCEIITRDVTNSELREVVNK 255
           YAQ +Q+R IR+KM +I+ R+ ++ +L+++V K
Sbjct: 155 YAQSSQIRQIRRKMRDIMVREASSCDLKDLVAK 187


>At4g34670.1 68417.m04922 40S ribosomal protein S3A (RPS3aB)
          Length = 262

 Score =  113 bits (271), Expect = 1e-25
 Identities = 80/207 (38%), Positives = 113/207 (54%), Gaps = 8/207 (3%)
 Frame = -3

Query: 717 PSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQ 538
           P  F+ R VG TLV+RTQGTKIASEGLK RVFEVSLADLQ D D   ++RK RL AE VQ
Sbjct: 35  PGSFTNRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDED--NAYRKIRLRAEDVQ 92

Query: 537 GRNVLCNFHGWTSQPISSGGWLKNGRLSSKPTLM*RQPMDTFYVSSALVSPIRTP*ANAR 358
           GRNVL  F G           +K  +   +  +   +  D + +    ++  +     A 
Sbjct: 93  GRNVLTQFWGMDFTTDKLRSLVKKWQTLIEAHVD-VKTTDGYTLRMFCIAFTK---RRAN 148

Query: 357 RVRPAHSGQSNQKENV*NHYTRRH*L*TQGGGEQVIPDSIAKYIEKA--------CHGIY 202
           +V+     QS+Q   +    +    +  +      + + +AK+I +A          GIY
Sbjct: 149 QVKRTCYAQSSQIRQIRRKMSE---IMVKEASSCDLKELVAKFIPEAIGREIEKATQGIY 205

Query: 201 PLRDVCIRKVKVLKRPRFEISKLMELH 121
           PL++V IRKVK+LK P+F++ KLME+H
Sbjct: 206 PLQNVFIRKVKILKAPKFDLGKLMEVH 232



 Score = 85.4 bits (202), Expect = 3e-17
 Identities = 38/65 (58%), Positives = 48/65 (73%)
 Frame = -2

Query: 508 MDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCTPSTLRSE 329
           MD TTDKLR +VKKWQTLIEA++DVKTTDGY LR+FCI FT + +   ++TC   + +  
Sbjct: 103 MDFTTDKLRSLVKKWQTLIEAHVDVKTTDGYTLRMFCIAFTKRRANQVKRTCYAQSSQIR 162

Query: 328 QSERK 314
           Q  RK
Sbjct: 163 QIRRK 167



 Score = 37.9 bits (84), Expect = 0.007
 Identities = 15/33 (45%), Positives = 26/33 (78%)
 Frame = -1

Query: 353 YAQHTQVRAIRKKMCEIITRDVTNSELREVVNK 255
           YAQ +Q+R IR+KM EI+ ++ ++ +L+E+V K
Sbjct: 155 YAQSSQIRQIRRKMSEIMVKEASSCDLKELVAK 187


>At3g17380.1 68416.m02221 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein similar to
           ubiquitin-specific protease 12 [Arabidopsis thaliana]
           GI:11993471; contains Pfam profile PF00917: MATH domain
          Length = 309

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = -3

Query: 618 VSLADLQADTDAERSFRKFRL-IAEYVQGRNVLCNFHGWTSQPISSGGWLK 469
           ++L D +  +D  + F +F + I + +QGR++      W S+  S  GW+K
Sbjct: 224 LTLVDPETISDGTKIFVEFTIRIFDQLQGRHIAGKVTKWFSRSSSEHGWVK 274


>At1g27170.1 68414.m03310 disease resistance protein (TIR-NBS-LRR
            class), putative domain signature TIR-NBS-LRR exists,
            suggestive of a disease resistance protein.
          Length = 1544

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
 Frame = +3

Query: 315  FLSDCSDLSVL--GVHVLRWLKESLLVKPMQKTRRTYPSVVFTSMLASMRVCHFLTIHLS 488
            FLS CSDLSVL   +  +  LKE LL     K      + +    + S+R C    + L 
Sbjct: 907  FLSGCSDLSVLPENIGAMTSLKELLLDGTAIKNLPESINRLQNLEILSLRGCKIQELPLC 966

Query: 489  LSVVRSI 509
            +  ++S+
Sbjct: 967  IGTLKSL 973


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,413,827
Number of Sequences: 28952
Number of extensions: 325748
Number of successful extensions: 1002
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 963
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 999
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1565336320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)