Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30397
         (406 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4H3.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    29   0.36 
SPAC3G9.11c |||pyruvate decarboxylase |Schizosaccharomyces pombe...    27   1.1  
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr...    26   1.9  
SPAC4F10.19c |||zf-HIT protein Hit1 |Schizosaccharomyces pombe|c...    26   1.9  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    26   1.9  
SPCC1020.05 |||phosphoprotein phosphatase |Schizosaccharomyces p...    26   1.9  
SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|ch...    25   3.4  
SPAC17A5.02c |dbr1||RNA lariat debranching enzyme Dbr1 |Schizosa...    25   4.5  
SPAC6B12.14c |||conserved fungal protein|Schizosaccharomyces pom...    25   5.9  
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces...    25   5.9  
SPBC1778.04 |spo6||Spo4-Spo6 kinase complex regulatory subunit S...    25   5.9  
SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces po...    24   7.8  
SPAC2F7.04 |pmc2|med1|RNA polymerase II holoenzyme mediator comp...    24   7.8  
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    24   7.8  

>SPAC4H3.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 391

 Score = 28.7 bits (61), Expect = 0.36
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +3

Query: 129 PLDRLNLLENSTEVKKCLENPHVREILELLDSSANPDELVQE 254
           P +  N+++  TE+K     P +R  +ELL S  + D L+ E
Sbjct: 330 PTEDRNVIDVKTEIKIRDFTPTLRSAIELLTSGTHADRLLSE 371


>SPAC3G9.11c |||pyruvate decarboxylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 570

 Score = 27.1 bits (57), Expect = 1.1
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = +3

Query: 165 EVKKCLENPHVREILELLDSSANPDELV 248
           E  K +E+  V EILEL++ S NP  LV
Sbjct: 195 ENNKEIEHEVVSEILELIEKSKNPSILV 222


>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1471

 Score = 26.2 bits (55), Expect = 1.9
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +3

Query: 123  TVPLDRLNLLENSTEVKKCL-ENPHVREILELLDSSANPDELVQ 251
            TV  ++LN+L NS    KCL + P        +D ++N ++LVQ
Sbjct: 930  TVLRNKLNILNNSLSKWKCLIKKPSDFSEPVSMDFTSNDEQLVQ 973


>SPAC4F10.19c |||zf-HIT protein Hit1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 154

 Score = 26.2 bits (55), Expect = 1.9
 Identities = 18/77 (23%), Positives = 36/77 (46%), Gaps = 7/77 (9%)
 Frame = +3

Query: 3   YCSVACYKLHKQNPCIKPPSPPKQTI-GVKQAVE------NLYPTEDTVPLDRLNLLENS 161
           YCS+ C+K+H Q+ C         T  GVK+ +       N+      +P      L + 
Sbjct: 23  YCSLPCWKIH-QSQCETVNDNNTTTFKGVKEPLNPPEPSPNVIYVNGRIPSLAEEALPSE 81

Query: 162 TEVKKCLENPHVREILE 212
           + ++  +E+P ++ ++E
Sbjct: 82  SLLESIVEDPSIKNLIE 98


>SPAC29B12.07 |sec16||multidomain vesicle coat component
           Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 26.2 bits (55), Expect = 1.9
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +3

Query: 51  KPPSPPKQTIGVKQAVENLYPTEDTVPLDRLNLLENSTEVKKCLEN 188
           KPPSP  + I    +VEN Y T      D L++ + ++++    E+
Sbjct: 187 KPPSPEVEKIETSTSVENAYITNSQYN-DTLDMEDQTSDLITTFEH 231


>SPCC1020.05 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 509

 Score = 26.2 bits (55), Expect = 1.9
 Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
 Frame = +3

Query: 36  QNPCIKPPSPPKQTIGVKQ--AVENLYPTED--TVPLDRLNLLENSTEVKKCLENPHVRE 203
           Q PC  PP+P  + +  K+  +V   Y  E+  T+ + +L+ L  S   + C  +P+  E
Sbjct: 174 QRPCETPPTPSIEALKRKELSSVTLTYDDEEKKTIKILQLSDLHYSNSDRPC-RDPYPYE 232

Query: 204 ILELLDSSANPDELVQEI 257
             E   + A     V E+
Sbjct: 233 TAEDCMADAKTTAFVNEL 250


>SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 658

 Score = 25.4 bits (53), Expect = 3.4
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +3

Query: 45  CIKPPSPPKQTIGVKQAVENLYPTEDTV 128
           CI   SPP    G+K     L PT +TV
Sbjct: 456 CITQSSPPCNISGIKPGSLKLSPTTNTV 483


>SPAC17A5.02c |dbr1||RNA lariat debranching enzyme Dbr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 466

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 14/53 (26%), Positives = 24/53 (45%)
 Frame = +3

Query: 54  PPSPPKQTIGVKQAVENLYPTEDTVPLDRLNLLENSTEVKKCLENPHVREILE 212
           PP P  + +   +  E ++  E+ V  D+L +  N  +       PH R+I E
Sbjct: 390 PPLPSLEVVKTLKRKEEIWVDENLVKKDKLGIPRNFCQTAP----PHSRDITE 438


>SPAC6B12.14c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 154

 Score = 24.6 bits (51), Expect = 5.9
 Identities = 14/35 (40%), Positives = 23/35 (65%), Gaps = 3/35 (8%)
 Frame = +3

Query: 156 NSTEVKKCLE---NPHVREILELLDSSANPDELVQ 251
           ++TEV K  +   N  +RE+LEL++S A+ D + Q
Sbjct: 42  STTEVLKAQKAGYNQALREVLELIESGASIDFISQ 76


>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1526

 Score = 24.6 bits (51), Expect = 5.9
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 93  AVENLYPTEDTVPLDRLNLLENSTE 167
           AVENL  TE  + LD+  +L  + E
Sbjct: 863 AVENLLTTERAIALDKEEILRRTQE 887


>SPBC1778.04 |spo6||Spo4-Spo6 kinase complex regulatory subunit
           Spo6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 474

 Score = 24.6 bits (51), Expect = 5.9
 Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
 Frame = +3

Query: 99  ENLYPTEDTVPLDRLNLLE-NSTEVKKCLENPHVREILELLDSSANPDELVQEICKNPYS 275
           ENL P E    +  LNLLE      +  L N   R+     D+     + V+   K+ Y 
Sbjct: 369 ENLLPVEKRAAMSPLNLLEPRLINKQNTLANQSPRQPPNAFDADPLAHKKVKIETKSGYC 428

Query: 276 QN 281
           +N
Sbjct: 429 EN 430


>SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 742

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 183 ENPHVREILELLDSSANPD 239
           ENP+V  + + +D S NPD
Sbjct: 370 ENPYVDVVPKAMDESENPD 388


>SPAC2F7.04 |pmc2|med1|RNA polymerase II holoenzyme mediator complex
           subunit |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 454

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
 Frame = +3

Query: 60  SPP-KQTIGVKQAVEN-LYPTEDTVPL--DRLNLLENSTEVKKCLENPHVREI 206
           SPP  Q+  +  A+EN L P   T+ L  D +NL+     VK  L+  HV +I
Sbjct: 230 SPPILQSSKINWALENTLTPIPTTMELVFDDINLIIPEQGVKPLLDLLHVHDI 282


>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 425

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 10/38 (26%), Positives = 22/38 (57%)
 Frame = +1

Query: 157 IQQKLRNV*KIPM*EKY*SCLILLQILMS*FKKYARTH 270
           +++K+  +  +    +    L++ ++LMS + KY RTH
Sbjct: 77  VREKIHEIQSMSQLSEKRKALLMQKMLMSGYLKYRRTH 114


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,465,700
Number of Sequences: 5004
Number of extensions: 27240
Number of successful extensions: 90
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 138190552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)