Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30397
(406 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0461 - 3280874-3281757,3281777-3282343,3282398-3283249,328... 30 0.80
01_01_0953 - 7472173-7472178,7472216-7472311,7472370-7472462,747... 30 0.80
01_01_0754 - 5823076-5823089,5823797-5823911,5823992-5824045,582... 29 1.4
08_01_0207 - 1647168-1647251,1647583-1647726,1648176-1648287,164... 28 2.4
01_03_0271 + 14454681-14456949,14457222-14457476,14458800-144588... 27 4.3
09_06_0035 - 20375009-20375080,20375290-20375379,20376582-203766... 27 5.6
11_05_0035 - 18509505-18509615,18509840-18509950,18510318-185103... 27 7.5
11_06_0592 - 25327128-25329566 26 9.9
>06_01_0461 -
3280874-3281757,3281777-3282343,3282398-3283249,
3284503-3284644
Length = 814
Score = 29.9 bits (64), Expect = 0.80
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Frame = -1
Query: 193 WGFSRHFLTSVEFSN--KLSLSNGTVSSVGYKFSTA-CFTPIVCFGG 62
WG+ + SV FSN + L+N + GY+ T C+ F G
Sbjct: 382 WGYDMDYAESVPFSNCRNMCLANAKCQAFGYRRRTGLCYPKYTLFNG 428
>01_01_0953 -
7472173-7472178,7472216-7472311,7472370-7472462,
7472855-7473019,7473689-7474821,7474902-7475426,
7477077-7477249,7478737-7478831,7478893-7481688
Length = 1693
Score = 29.9 bits (64), Expect = 0.80
Identities = 19/73 (26%), Positives = 34/73 (46%)
Frame = +3
Query: 96 VENLYPTEDTVPLDRLNLLENSTEVKKCLENPHVREILELLDSSANPDELVQEICKNPYS 275
+ENL +D VP+ N++ + NP+ + I++ L + + E +NPY
Sbjct: 530 IENLLIIKDMVPVPSANVITRAPRYVAADINPYAQPIVQNLSKALS----FPESYENPYL 585
Query: 276 QNLLMHV*KLFNL 314
LM V + N+
Sbjct: 586 MKCLMRVLGIANI 598
>01_01_0754 -
5823076-5823089,5823797-5823911,5823992-5824045,
5825629-5827251
Length = 601
Score = 29.1 bits (62), Expect = 1.4
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 5/73 (6%)
Frame = +3
Query: 39 NPCIKPPSPPKQTIGVKQAVENLYPTEDTVPLD--RLNLLENSTEV---KKCLENPHVRE 203
+P PP P +Q +Q + ++P ++PL+ + ++NST V K + + R
Sbjct: 198 HPAAAPPPPEQQQQQQQQHADLIFPISRSLPLNDGQWFAIQNSTNVQSKKLVIPSNTYRA 257
Query: 204 ILELLDSSANPDE 242
+LE+ S + DE
Sbjct: 258 VLEVFVSFHSNDE 270
>08_01_0207 -
1647168-1647251,1647583-1647726,1648176-1648287,
1648392-1648573,1648649-1648780,1648900-1649856,
1649949-1650734
Length = 798
Score = 28.3 bits (60), Expect = 2.4
Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = +3
Query: 162 TEVKKCLENPHVREILELLDSSANP-DELVQ 251
+E+++C ENP V E+ + LDS N D LV+
Sbjct: 139 SELRQCRENPRVSELEKDLDSRKNEIDRLVR 169
>01_03_0271 +
14454681-14456949,14457222-14457476,14458800-14458864,
14459053-14459171,14459270-14459324
Length = 920
Score = 27.5 bits (58), Expect = 4.3
Identities = 18/75 (24%), Positives = 39/75 (52%)
Frame = +3
Query: 132 LDRLNLLENSTEVKKCLENPHVREILELLDSSANPDELVQEICKNPYSQNLLMHV*KLFN 311
L++ NL+ + +K CL N H E+++L +++Q+ + P S +L+ V + +
Sbjct: 513 LEKKNLVSWTAMMKGCLSNGHADEVVQLF-------QVMQKYGEKPDSVSLVTAVQAVSD 565
Query: 312 LNNIMKLNIVSMRIY 356
L ++ L + +Y
Sbjct: 566 LGHLNGLKQIHCFVY 580
>09_06_0035 -
20375009-20375080,20375290-20375379,20376582-20376684,
20376784-20376864,20376966-20377192
Length = 190
Score = 27.1 bits (57), Expect = 5.6
Identities = 15/54 (27%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Frame = +3
Query: 132 LDRLN-LLENSTEVKKCLENPHVR---EILELLDSSANPDELVQEICKNPYSQN 281
L RLN L+ ++K E +++ E++ L+D NPDE +++ + ++N
Sbjct: 73 LQRLNSLVAELDTMQKHAEGCNIQVPMEVVNLIDDGKNPDEFTRDVLNSCIAKN 126
>11_05_0035 -
18509505-18509615,18509840-18509950,18510318-18510377,
18510459-18510576,18510711-18510811,18510891-18510962,
18511069-18511156,18511423-18511557,18511655-18511767,
18511980-18512051,18512154-18512258,18512371-18512484,
18512587-18512681,18513539-18513686
Length = 480
Score = 26.6 bits (56), Expect = 7.5
Identities = 13/50 (26%), Positives = 27/50 (54%)
Frame = +3
Query: 24 KLHKQNPCIKPPSPPKQTIGVKQAVENLYPTEDTVPLDRLNLLENSTEVK 173
+L + ++ PK+T V + VE + + + L+++ L ++STE K
Sbjct: 219 RLFSKKKQLRAKKDPKKTDEVNEEVEEQEFSVERIRLEKMELRKSSTEAK 268
>11_06_0592 - 25327128-25329566
Length = 812
Score = 26.2 bits (55), Expect = 9.9
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Frame = +3
Query: 120 DTVPLDR-LNLLENSTEVKKCLENPHVREILELLDS-SANPDELVQEI 257
+ +PLD + LE+ ++KKCL+ HV + LL + A P ++E+
Sbjct: 184 EMLPLDLGKDALEHLHDIKKCLDGGHVASMKMLLRALYAYPYGTIEEL 231
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,581,117
Number of Sequences: 37544
Number of extensions: 150921
Number of successful extensions: 569
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 537
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 569
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 706675332
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -