Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30397
         (406 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36281| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.089
SB_29501| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.089
SB_42048| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.15 
SB_15242| Best HMM Match : E2F_TDP (HMM E-Value=6e-14)                 32   0.15 
SB_39986| Best HMM Match : CNH (HMM E-Value=6.99949e-42)               29   1.4  
SB_58325| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.5  
SB_20620| Best HMM Match : zf-HIT (HMM E-Value=8.5e-10)                28   2.5  
SB_44839| Best HMM Match : RVT_1 (HMM E-Value=0.071)                   27   4.4  
SB_24605| Best HMM Match : HNOB (HMM E-Value=0)                        27   4.4  
SB_10983| Best HMM Match : RVP (HMM E-Value=3.8e-05)                   27   5.8  
SB_29327| Best HMM Match : Vicilin_N (HMM E-Value=0.17)                27   7.7  
SB_49877| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.7  

>SB_36281| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 383

 Score = 33.1 bits (72), Expect = 0.089
 Identities = 24/74 (32%), Positives = 34/74 (45%)
 Frame = +3

Query: 48  IKPPSPPKQTIGVKQAVENLYPTEDTVPLDRLNLLENSTEVKKCLENPHVREILELLDSS 227
           + P  P K  I V  A +N+  TE  +P   +   EN T V   L  P V +I E  + +
Sbjct: 131 MSPSMPGKPDIVVTDASKNVCFTEFKIPTIPI---ENITFVNGVLGTPAVAQIQENQNGT 187

Query: 228 ANPDELVQEICKNP 269
              DE + E+  NP
Sbjct: 188 KTEDESMAEVGNNP 201


>SB_29501| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 418

 Score = 33.1 bits (72), Expect = 0.089
 Identities = 24/74 (32%), Positives = 34/74 (45%)
 Frame = +3

Query: 48  IKPPSPPKQTIGVKQAVENLYPTEDTVPLDRLNLLENSTEVKKCLENPHVREILELLDSS 227
           + P  P K  I V  A +N+  TE  +P   +   EN T V   L  P V +I E  + +
Sbjct: 166 MSPSMPGKPDIVVTDASKNVCFTEFKIPTIPI---ENITFVNGVLGTPAVAQIQENQNGT 222

Query: 228 ANPDELVQEICKNP 269
              DE + E+  NP
Sbjct: 223 KTEDESMAEVGNNP 236


>SB_42048| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 104

 Score = 32.3 bits (70), Expect = 0.15
 Identities = 17/62 (27%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
 Frame = +3

Query: 90  QAVENLYPTEDTVPLDRLNL--LENSTEVKKCLENPHVREILELLDSSANPDELVQEICK 263
           +  +++  TED   L+  +L  L NS  ++  L NPH+R+++  +D   NP  ++    +
Sbjct: 13  EVYDDVQVTEDEDRLNEHDLAKLANSKAIRDLLCNPHLRKMITEIDCHPNPGVILGNAMR 72

Query: 264 NP 269
            P
Sbjct: 73  EP 74



 Score = 31.5 bits (68), Expect = 0.27
 Identities = 12/18 (66%), Positives = 14/18 (77%)
 Frame = +2

Query: 257 MQEPIFTEFVDACLKVVQ 310
           M+EP+F EF D CL VVQ
Sbjct: 71  MREPVFAEFADQCLAVVQ 88


>SB_15242| Best HMM Match : E2F_TDP (HMM E-Value=6e-14)
          Length = 273

 Score = 32.3 bits (70), Expect = 0.15
 Identities = 17/40 (42%), Positives = 27/40 (67%)
 Frame = +3

Query: 66  PKQTIGVKQAVENLYPTEDTVPLDRLNLLENSTEVKKCLE 185
           PK+TI V++AVE L+  +  V  D +N+LE +  VK+ L+
Sbjct: 98  PKRTISVEKAVERLHANKRRV-YDIVNILEGAGVVKRTLD 136


>SB_39986| Best HMM Match : CNH (HMM E-Value=6.99949e-42)
          Length = 952

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 23/90 (25%), Positives = 38/90 (42%), Gaps = 11/90 (12%)
 Frame = +3

Query: 15  ACYKLHKQNPCIKPPSPPKQTIGVKQA-----------VENLYPTEDTVPLDRLNLLENS 161
           AC K  K N   KPP PP  +   K+            V N++P +  V LD ++    S
Sbjct: 304 ACGKKRKANNANKPPLPPDSSHRPKERMHHNIPHRFVNVLNMHPVKCAVCLDSVHFGRQS 363

Query: 162 TEVKKCLENPHVREILELLDSSANPDELVQ 251
           ++  +C    H++    L  +   P + V+
Sbjct: 364 SKCAECDSVCHIKCCPNLPHTCGLPSQFVE 393


>SB_58325| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 80

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 38  KSLYQTTVPAETNNRRKASC*KFIPYRRYG 127
           K ++ TT   E    +  +C  FIP++RYG
Sbjct: 50  KRVWSTTCHREDMTEKPKACAMFIPFKRYG 79


>SB_20620| Best HMM Match : zf-HIT (HMM E-Value=8.5e-10)
          Length = 567

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 19/81 (23%), Positives = 37/81 (45%)
 Frame = +3

Query: 3   YCSVACYKLHKQNPCIKPPSPPKQTIGVKQAVENLYPTEDTVPLDRLNLLENSTEVKKCL 182
           YCS++CY+  K   C +     +Q +     +++  P +    ++ L  LE+  + +   
Sbjct: 44  YCSISCYRCEKHVECTE--DFYRQNVMDALKLDSNCPDDPDRIIEMLKRLEDDGKGEGDE 101

Query: 183 ENPHVREILELLDSSANPDEL 245
           E   + E L  +D   +PD L
Sbjct: 102 EGSGLEERLRDIDLDRDPDVL 122


>SB_44839| Best HMM Match : RVT_1 (HMM E-Value=0.071)
          Length = 351

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -1

Query: 313 RLNNFQTCINKFCEYGFLHI 254
           R N F   +N FC YG +HI
Sbjct: 323 RKNGFADIVNMFCNYGKVHI 342


>SB_24605| Best HMM Match : HNOB (HMM E-Value=0)
          Length = 676

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +3

Query: 21  YKLHKQNPCIKPPSPPKQTIGVKQAV 98
           Y+L   N   KPP P   T+G K+AV
Sbjct: 187 YRLEFNNEGYKPPPPDFLTVGTKKAV 212


>SB_10983| Best HMM Match : RVP (HMM E-Value=3.8e-05)
          Length = 717

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 9/32 (28%), Positives = 20/32 (62%)
 Frame = +3

Query: 93  AVENLYPTEDTVPLDRLNLLENSTEVKKCLEN 188
           + +N+ P+ED +P+   N+L ++  + K  +N
Sbjct: 60  SADNMLPSEDNMPISADNMLTSADNMPKSADN 91


>SB_29327| Best HMM Match : Vicilin_N (HMM E-Value=0.17)
          Length = 349

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 180 LENPHVREILELLDSSANPDELV 248
           LE    RE LE+L+   NPDE++
Sbjct: 184 LEEEEERERLEILEEGLNPDEIM 206


>SB_49877| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 607

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 16/60 (26%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
 Frame = +3

Query: 93  AVENLYPTE-DTVPLDRLNLL---ENSTEVKKCLENPHVREILELLDSSANPDELVQEIC 260
           A + L+PT  ++ P++R  LL       E+ + L +P+V  ++ ++     P  L+ E+C
Sbjct: 31  AAKRLHPTLLESGPIERGALLAKFRRECELLEALNHPNVVRLITVIYEGNKPPILITELC 90


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,430,644
Number of Sequences: 59808
Number of extensions: 178257
Number of successful extensions: 528
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 489
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 528
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 727815563
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)