Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30397
         (406 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81125-3|CAB03384.1|  790|Caenorhabditis elegans Hypothetical pr...    28   2.9  
U28731-2|AAA68297.1|  658|Caenorhabditis elegans Hypothetical pr...    28   2.9  
U97012-3|AAK39144.2|  588|Caenorhabditis elegans Groundhog (hedg...    27   5.1  
U39993-1|AAA81086.1|  594|Caenorhabditis elegans Hypothetical pr...    27   6.8  
U39677-1|AAC47961.2|  457|Caenorhabditis elegans Hypothetical pr...    26   9.0  

>Z81125-3|CAB03384.1|  790|Caenorhabditis elegans Hypothetical
           protein T22A3.5 protein.
          Length = 790

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
 Frame = +3

Query: 69  KQTIGVKQAVENLYPTEDTVPLDRLNLLENST---EVKKCLENPHVREILELLDSSANPD 239
           K   GV++ +EN    ++T P+   N++E+S    E+   L++P   +I E+   SAN  
Sbjct: 50  KMEEGVEETMENASVVKETTPVKDENIVEDSNSSEELFPYLDSPPEDKIQEI---SANDT 106

Query: 240 ELVQ 251
           E+ Q
Sbjct: 107 EIDQ 110


>U28731-2|AAA68297.1|  658|Caenorhabditis elegans Hypothetical
           protein F12A10.4 protein.
          Length = 658

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 13/32 (40%), Positives = 22/32 (68%)
 Frame = +3

Query: 147 LLENSTEVKKCLENPHVREILELLDSSANPDE 242
           +L+   + K+C++  +  E+LEL+DSS NP E
Sbjct: 89  MLDLPCQTKECVK--YSAELLELMDSSVNPCE 118


>U97012-3|AAK39144.2|  588|Caenorhabditis elegans Groundhog
           (hedgehog-like family)protein 9 protein.
          Length = 588

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 15/37 (40%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
 Frame = +3

Query: 21  YKLHKQNPCIKPPSPPK-QTIGVKQAVENLYPTEDTV 128
           Y    Q P   PP PPK Q    +Q  EN Y T + V
Sbjct: 218 YNQAPQRPLYIPPPPPKLQVYPPQQLAENPYQTRNGV 254


>U39993-1|AAA81086.1|  594|Caenorhabditis elegans Hypothetical
           protein F47E1.3 protein.
          Length = 594

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 109 YKFSTACFTPIVCFGGDG 56
           ++  T CFT +VCF  DG
Sbjct: 371 FQLPTGCFTTLVCFKPDG 388


>U39677-1|AAC47961.2|  457|Caenorhabditis elegans Hypothetical
           protein C16E9.2a protein.
          Length = 457

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -2

Query: 276 VNMGSCIFLELTHQDLQKNQAALIFL 199
           V  G C+ +EL  +D QK + +++FL
Sbjct: 223 VRDGECVCVELVARDRQKTRESVVFL 248


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,031,104
Number of Sequences: 27780
Number of extensions: 151770
Number of successful extensions: 602
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 602
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 641068680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)