Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30397
         (406 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   2.3  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    21   4.0  
S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    21   5.3  
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    20   9.3  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    20   9.3  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    20   9.3  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    20   9.3  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    20   9.3  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    20   9.3  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.2 bits (45), Expect = 2.3
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +3

Query: 33  KQNPCIKPPSPPK 71
           K+ PC +PPS P+
Sbjct: 310 KKMPCTQPPSAPQ 322


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 4.0
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = -1

Query: 124 VSSVGYKFSTACFTPIVCFGGDGGL 50
           +  +GY  ++  F PI  + GD  L
Sbjct: 178 IKKIGYNTASVAFVPISGWHGDNML 202


>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 21.0 bits (42), Expect = 5.3
 Identities = 12/35 (34%), Positives = 15/35 (42%)
 Frame = -1

Query: 175 FLTSVEFSNKLSLSNGTVSSVGYKFSTACFTPIVC 71
           F   V+ S   SL    V SV Y      F+P +C
Sbjct: 134 FFIYVQPSATFSLDLNKVVSVFYTAVIPMFSPFIC 168


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 20.2 bits (40), Expect = 9.3
 Identities = 8/25 (32%), Positives = 12/25 (48%)
 Frame = -1

Query: 124 VSSVGYKFSTACFTPIVCFGGDGGL 50
           +  +GY  +   F PI  + GD  L
Sbjct: 105 IKKIGYNPAAVAFVPISGWHGDNML 129


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 20.2 bits (40), Expect = 9.3
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = +1

Query: 106 YTLQKIRYHW 135
           YT++ IRY W
Sbjct: 161 YTMRDIRYKW 170


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 20.2 bits (40), Expect = 9.3
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = +1

Query: 106 YTLQKIRYHW 135
           YT++ IRY W
Sbjct: 161 YTMRDIRYKW 170


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 20.2 bits (40), Expect = 9.3
 Identities = 8/25 (32%), Positives = 12/25 (48%)
 Frame = -1

Query: 124 VSSVGYKFSTACFTPIVCFGGDGGL 50
           +  +GY  +   F PI  + GD  L
Sbjct: 121 IKKIGYNPAAVAFVPISGWHGDNML 145


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 20.2 bits (40), Expect = 9.3
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = +1

Query: 106 YTLQKIRYHW 135
           YT++ IRY W
Sbjct: 100 YTMRDIRYKW 109


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 20.2 bits (40), Expect = 9.3
 Identities = 8/25 (32%), Positives = 12/25 (48%)
 Frame = -1

Query: 124 VSSVGYKFSTACFTPIVCFGGDGGL 50
           +  +GY  +   F PI  + GD  L
Sbjct: 178 IKKIGYNPAAVAFVPISGWHGDNML 202


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,217
Number of Sequences: 438
Number of extensions: 1953
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10132494
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)