Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30397
(406 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g28820.1 68417.m04120 zinc finger (HIT type) family protein c... 40 8e-04
At1g26665.2 68414.m03248 expressed protein 30 0.68
At1g26665.1 68414.m03247 expressed protein 30 0.68
At5g41910.1 68418.m05102 RNA polymerase II mediator complex prot... 29 1.2
At1g05490.1 68414.m00559 C protein immunoglobulin-A-binding beta... 29 1.6
At1g08750.3 68414.m00974 GPI-anchor transamidase, putative simil... 28 2.7
At1g08750.2 68414.m00973 GPI-anchor transamidase, putative simil... 28 2.7
At1g08750.1 68414.m00972 GPI-anchor transamidase, putative simil... 28 2.7
At3g60920.1 68416.m06815 beige/BEACH domain-containing protein c... 27 4.8
At1g10780.1 68414.m01235 F-box family protein ; similar to SKP1... 27 4.8
At5g34860.1 68418.m04105 hypothetical protein 26 8.3
At4g00540.2 68417.m00075 myb family transcription factor 26 8.3
At4g00540.1 68417.m00074 myb family transcription factor 26 8.3
At2g36700.1 68415.m04503 pectinesterase family protein contains ... 26 8.3
At1g49230.1 68414.m05519 zinc finger (C3HC4-type RING finger) fa... 26 8.3
>At4g28820.1 68417.m04120 zinc finger (HIT type) family protein
contains Pfam profile: PF04438 HIT zinc finger
Length = 173
Score = 39.5 bits (88), Expect = 8e-04
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = +3
Query: 3 YCSVACYKLHKQNPCIKPPSP 65
YCS+ C+K+HK+ PC KP P
Sbjct: 28 YCSLGCFKIHKETPCAKPSDP 48
>At1g26665.2 68414.m03248 expressed protein
Length = 189
Score = 29.9 bits (64), Expect = 0.68
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Frame = +3
Query: 96 VENLYPTEDTVPLDRLNLL----ENSTEVKKCLENPHVREILELLDSSANPDELVQEICK 263
V + P L RLN L +N T++ + E+L L+D NPDE +++
Sbjct: 60 VTSFTPASQLHLLQRLNSLVMELDNMTKLSEKCNIQIPMEVLNLIDDGKNPDEFTKDVLN 119
Query: 264 NPYSQN 281
+ ++N
Sbjct: 120 SCIARN 125
>At1g26665.1 68414.m03247 expressed protein
Length = 189
Score = 29.9 bits (64), Expect = 0.68
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Frame = +3
Query: 96 VENLYPTEDTVPLDRLNLL----ENSTEVKKCLENPHVREILELLDSSANPDELVQEICK 263
V + P L RLN L +N T++ + E+L L+D NPDE +++
Sbjct: 60 VTSFTPASQLHLLQRLNSLVMELDNMTKLSEKCNIQIPMEVLNLIDDGKNPDEFTKDVLN 119
Query: 264 NPYSQN 281
+ ++N
Sbjct: 120 SCIARN 125
>At5g41910.1 68418.m05102 RNA polymerase II mediator complex
protein-related similar to SP|P87310 RNA polymerase II
mediator complex protein nut2 {Schizosaccharomyces
pombe}
Length = 186
Score = 29.1 bits (62), Expect = 1.2
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 5/71 (7%)
Frame = +3
Query: 84 VKQAVENLYPTEDTVPLDRLN-LLENSTEVKKCLENPHVR---EILELLDSSANPDELVQ 251
+K V + P L RLN L+ + K + +++ E+L L+D NPDE +
Sbjct: 52 LKLTVSSFTPASQLHLLQRLNSLVMELDNMAKLSDKCNIQVPIEVLNLIDDGKNPDEFTK 111
Query: 252 EIC-KNPYSQN 281
++ KN ++N
Sbjct: 112 DVLNKNCIAKN 122
>At1g05490.1 68414.m00559 C protein immunoglobulin-A-binding beta
antigen-related contains weak similarity to C protein
immunoglobulin-A-binding beta antigen [Streptococcus
agalactiae] gi|18028989|gb|AAL56250
Length = 731
Score = 28.7 bits (61), Expect = 1.6
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Frame = +3
Query: 33 KQNPCIKPPSPPKQTIGV-KQAVENLYPTEDTVPLDRLNLLENSTEVKK-CLENPHVREI 206
+QNPC+K S +GV K+ + + +P+ R + L++ +E K CL EI
Sbjct: 106 EQNPCLKERSFRVSDLGVEKKCSPEITDLDVGIPVPRFSKLKDVSEQKNTCLMQKSSPEI 165
Query: 207 LEL 215
+L
Sbjct: 166 ADL 168
>At1g08750.3 68414.m00974 GPI-anchor transamidase, putative similar
to SP|P49018 GPI-anchor transamidase (EC 3.-.-.-) (GPI
transamidase) {Saccharomyces cerevisiae}; contains Pfam
profile PF01650: Peptidase C13 family
Length = 388
Score = 27.9 bits (59), Expect = 2.7
Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Frame = +3
Query: 210 ELLDSSANPDELVQEICKNPYSQ---NLLMHV*KLFNLNNIMKLNIVSM 347
EL +++ DEL+ E K PYSQ +L V KL N++ ++ L+I M
Sbjct: 328 ELENTNIPNDELIAEKQKCPYSQMRADLHEKVEKLENVDTVVNLSIAVM 376
>At1g08750.2 68414.m00973 GPI-anchor transamidase, putative similar
to SP|P49018 GPI-anchor transamidase (EC 3.-.-.-) (GPI
transamidase) {Saccharomyces cerevisiae}; contains Pfam
profile PF01650: Peptidase C13 family
Length = 388
Score = 27.9 bits (59), Expect = 2.7
Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Frame = +3
Query: 210 ELLDSSANPDELVQEICKNPYSQ---NLLMHV*KLFNLNNIMKLNIVSM 347
EL +++ DEL+ E K PYSQ +L V KL N++ ++ L+I M
Sbjct: 328 ELENTNIPNDELIAEKQKCPYSQMRADLHEKVEKLENVDTVVNLSIAVM 376
>At1g08750.1 68414.m00972 GPI-anchor transamidase, putative similar
to SP|P49018 GPI-anchor transamidase (EC 3.-.-.-) (GPI
transamidase) {Saccharomyces cerevisiae}; contains Pfam
profile PF01650: Peptidase C13 family
Length = 388
Score = 27.9 bits (59), Expect = 2.7
Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Frame = +3
Query: 210 ELLDSSANPDELVQEICKNPYSQ---NLLMHV*KLFNLNNIMKLNIVSM 347
EL +++ DEL+ E K PYSQ +L V KL N++ ++ L+I M
Sbjct: 328 ELENTNIPNDELIAEKQKCPYSQMRADLHEKVEKLENVDTVVNLSIAVM 376
>At3g60920.1 68416.m06815 beige/BEACH domain-containing protein
contains Pfam PF02138: Beige/BEACH domain; similar to LBA
isoform gamma (GI:10257405) [Mus musculus]; similar to
beige-like protein (CDC4L) - Homo sapiens; similar to
Neurobeachin: kinase A-anchoring, beige/Chediak-higashi
protein homolog implicated in neuronal membrane traffic
(AKAP550) (GI:11863541) [Drosophila melanogaster].
Length = 1928
Score = 27.1 bits (57), Expect = 4.8
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +3
Query: 120 DTVPLDRLNLLENSTEVKKCLENPHVREILELLDSSANP 236
D PL N+++NSTEVK L R +LE+ + P
Sbjct: 1510 DHRPLSEQNMVQNSTEVKD-LSELKERIVLEISSTMVRP 1547
>At1g10780.1 68414.m01235 F-box family protein ; similar to SKP1
interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250
Length = 418
Score = 27.1 bits (57), Expect = 4.8
Identities = 13/53 (24%), Positives = 29/53 (54%)
Frame = +3
Query: 138 RLNLLENSTEVKKCLENPHVREILELLDSSANPDELVQEICKNPYSQNLLMHV 296
++N LE+ + + L+ +R IL + + ++ D+ +ICK + L+H+
Sbjct: 366 KMNTLESLVKYARGLKRMVIR-ILRMKSNHSSADDFCDDICKFRHMNEHLVHI 417
>At5g34860.1 68418.m04105 hypothetical protein
Length = 394
Score = 26.2 bits (55), Expect = 8.3
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Frame = +3
Query: 81 GVKQAVENLYPTEDTVPLD---RLNLLENSTEVKKCLENPHVREILELLDSSA 230
G+ AV++++P V + RL+ + T K PH+ EILE SA
Sbjct: 212 GLLNAVKDMFPQAQVVRIQAIKRLSKRRDKTATCKTKFPPHIMEILEANCKSA 264
>At4g00540.2 68417.m00075 myb family transcription factor
Length = 401
Score = 26.2 bits (55), Expect = 8.3
Identities = 17/53 (32%), Positives = 25/53 (47%)
Frame = +1
Query: 7 VQSPVINYTNKILVSNHRPRRNKQ*A*SKLLKIYTLQKIRYHWIDSIY*KIQQ 165
++SP ILV R NK +KLL T I+ HW S+ +++Q
Sbjct: 155 IKSPWTREEELILVQAQRGNGNKWAEIAKLLPGRTENNIKNHWNCSVKKRLEQ 207
>At4g00540.1 68417.m00074 myb family transcription factor
Length = 437
Score = 26.2 bits (55), Expect = 8.3
Identities = 17/53 (32%), Positives = 25/53 (47%)
Frame = +1
Query: 7 VQSPVINYTNKILVSNHRPRRNKQ*A*SKLLKIYTLQKIRYHWIDSIY*KIQQ 165
++SP ILV R NK +KLL T I+ HW S+ +++Q
Sbjct: 155 IKSPWTREEELILVQAQRGNGNKWAEIAKLLPGRTENNIKNHWNCSVKKRLEQ 207
>At2g36700.1 68415.m04503 pectinesterase family protein contains
Pfam profile: PF01095 pectinesterase
Length = 333
Score = 26.2 bits (55), Expect = 8.3
Identities = 17/35 (48%), Positives = 22/35 (62%)
Frame = -1
Query: 190 GFSRHFLTSVEFSNKLSLSNGTVSSVGYKFSTACF 86
G+SR TS+E++N + SNGT SS FS A F
Sbjct: 98 GYSR---TSIEWNNTTASSNGTFSS----FSVAVF 125
>At1g49230.1 68414.m05519 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 219
Score = 26.2 bits (55), Expect = 8.3
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 222 SSANPDELVQEICKNPYSQNLLMH 293
S+ P E+ QEI + YS+ LL H
Sbjct: 10 STIKPTEIFQEILGSSYSRKLLFH 33
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,304,568
Number of Sequences: 28952
Number of extensions: 131793
Number of successful extensions: 456
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 443
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 456
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 595686720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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