Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30396
         (664 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7038| Best HMM Match : No HMM Matches (HMM E-Value=.)              139   2e-33
SB_3407| Best HMM Match : TPX2 (HMM E-Value=2.9e-09)                   31   1.1  
SB_805| Best HMM Match : No HMM Matches (HMM E-Value=.)                30   1.9  
SB_40626| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_49306| Best HMM Match : Herpes_US9 (HMM E-Value=5.7)                28   5.9  
SB_38054| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  

>SB_7038| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 224

 Score =  139 bits (336), Expect = 2e-33
 Identities = 62/85 (72%), Positives = 74/85 (87%)
 Frame = +3

Query: 3   RVRMSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAV 182
           +V + +L+LQKRLAAS+++CGKKK+WLDPNE NEIAN NSRQN+RK+IKDGL+IKKP  V
Sbjct: 26  KVHVGTLRLQKRLAASLLKCGKKKIWLDPNECNEIANANSRQNVRKLIKDGLIIKKPEIV 85

Query: 183 HSRARVRKNTEARRKGRHCGFGKRE 257
           HSRARVRK  EAR KGRH G GKR+
Sbjct: 86  HSRARVRKADEARSKGRHSGHGKRK 110



 Score =  127 bits (306), Expect = 9e-30
 Identities = 59/84 (70%), Positives = 66/84 (78%)
 Frame = +2

Query: 254 RGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHSLYMKAKGNVFKNKRVLMEY 433
           +GTANARMPQK +W                AKKID H+YHSLYMK+KGNVFKNKRVLMEY
Sbjct: 110 KGTANARMPQKTIWIRRMRVLRRLLRKYREAKKIDNHMYHSLYMKSKGNVFKNKRVLMEY 169

Query: 434 IHRKKAEKARTKMLSDQAEARRNK 505
           IH+KKAEKAR+K+LSDQAEARRNK
Sbjct: 170 IHKKKAEKARSKLLSDQAEARRNK 193


>SB_3407| Best HMM Match : TPX2 (HMM E-Value=2.9e-09)
          Length = 787

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +2

Query: 494 RRNKVRRHASAARNV-LPPRRRNCCRPSLEKTKPRLPLRSK 613
           R N V   AS +R    PP  +N  +P ++KTKP  PL ++
Sbjct: 182 RNNIVLSTASWSRKTSAPPSEKNAFQPPMKKTKPSSPLLTR 222


>SB_805| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1270

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 23/62 (37%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
 Frame = +2

Query: 455  KARTKMLSDQAEARRNKVRRHASAARNVLPPRR---RNCCRPSLEKTKPRLPLRSKHYVV 625
            KA    L D+ EA RN++R    A+RN L  R    RN  R   E ++ R  LR +H   
Sbjct: 949  KALCNRLRDRHEASRNRLRDRHEASRNRLRDRHEASRNRLRNRHEASRNR--LRDRHEAS 1006

Query: 626  NN 631
             N
Sbjct: 1007 RN 1008


>SB_40626| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 979

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 16/74 (21%), Positives = 30/74 (40%)
 Frame = +2

Query: 350 KIDRHLYHSLYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQAEARRNKVRRHASAA 529
           +  R  Y +LY   KGN F +   L++       E+ R K         + ++R+  +  
Sbjct: 70  EFQRKRYGNLYQLLKGNTFTDAEDLVKLWDAAHYEEERAKKRKPLTPLAKFRIRQRFTPP 129

Query: 530 RNVLPPRRRNCCRP 571
           + + P  R+    P
Sbjct: 130 KTICPKGRQKSTLP 143


>SB_49306| Best HMM Match : Herpes_US9 (HMM E-Value=5.7)
          Length = 381

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
 Frame = -2

Query: 318 LKTLCLCTHSSFCGIRALAVPLSYQSHSDDPFYVL---LCFCGHE--RGSVLLQ 172
           L+ LC C HS+  G   L   L Y  HS     +L   LC+ GH    G++LL+
Sbjct: 91  LRALCYCGHSAIVG-TLLLWALCYYGHSAITGTLLLRALCYYGHSAITGTLLLR 143


>SB_38054| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 78

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -3

Query: 272 AHWLYLSLTKATVTTLSTCFCVFADTSAGVYCYRFLDDE 156
           A  + L + K  VT  +TC   FA   AG   ++FL D+
Sbjct: 37  AQAILLEIVKRKVTRKATCARCFAGPRAGDVSFKFLPDQ 75


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,379,427
Number of Sequences: 59808
Number of extensions: 400789
Number of successful extensions: 1339
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1332
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1705624125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)