Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30395
(504 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1220 - 24966169-24966327,24966421-24966552,24966639-249666... 145 2e-35
05_02_0059 + 6230139-6230199,6231716-6232506,6233108-6233149 31 0.53
03_02_0750 + 10909130-10909616,10912257-10912916,10913139-109135... 31 0.69
11_01_0278 - 2068800-2068826,2070001-2070442,2070702-2072047 30 0.92
02_05_0237 + 27095817-27097433 30 1.2
07_01_0214 + 1595917-1596526,1597127-1597140,1598414-1598743,159... 29 2.1
01_07_0132 - 41298184-41298558,41298648-41298729,41298850-412989... 29 2.1
02_05_1123 + 34275272-34275331,34275451-34275523,34275631-342757... 29 2.8
08_01_0892 - 8778097-8778236,8778390-8778486,8778568-8778747,877... 28 3.7
03_01_0652 + 4771551-4771821,4771931-4772038,4772744-4773024,477... 28 3.7
08_02_1338 - 26244928-26245159,26246420-26247374,26247921-26249187 28 4.9
08_01_0346 - 3063440-3064189 28 4.9
06_01_0525 - 3800578-3801018,3801395-3801504,3801608-3801683,380... 28 4.9
05_06_0254 - 26706830-26706943,26707063-26707193,26707330-267074... 28 4.9
01_01_0213 + 1833221-1835062,1835429-1835558,1835726-1836411 28 4.9
11_06_0406 - 23192363-23194911,23195152-23195247,23195622-23196090 27 6.5
02_01_0137 + 988442-988641,989088-989281,989369-989488,989594-98... 27 6.5
10_01_0017 - 218188-218261,219262-219379,220348-220932,220996-22... 27 8.6
05_03_0039 - 7621613-7622695 27 8.6
04_01_0360 - 4720997-4721812 27 8.6
>07_03_1220 -
24966169-24966327,24966421-24966552,24966639-24966693,
24967496-24967667,24967771-24967918,24968015-24968050
Length = 233
Score = 145 bits (352), Expect = 2e-35
Identities = 68/83 (81%), Positives = 75/83 (90%)
Frame = +1
Query: 7 RGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFV 186
RGLCAIAQAESLRYKL+GGLAVRRACYGVLRF+MESGA+GCEV+VSGKLR QRAKSMKF
Sbjct: 96 RGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFK 155
Query: 187 DGLMIHSGDPCNDYVNTATRHVL 255
DG MI SG P N Y+++A RHVL
Sbjct: 156 DGYMISSGYPVNLYIDSAVRHVL 178
Score = 62.5 bits (145), Expect = 2e-10
Identities = 30/51 (58%), Positives = 36/51 (70%), Gaps = 1/51 (1%)
Frame = +3
Query: 255 LRQGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPVPLEP-TSEV 404
LRQGVLGIKVKIML WD +GK GP P PD + + PKDE +P T+E+
Sbjct: 179 LRQGVLGIKVKIMLDWDPKGKQGPMTPLPDLVTIHAPKDEDEFSKPLTAEI 229
>05_02_0059 + 6230139-6230199,6231716-6232506,6233108-6233149
Length = 297
Score = 31.1 bits (67), Expect = 0.53
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +2
Query: 314 QERPEEATTRPHPGNRAQGRARAPR 388
Q R + +T RP PG R++GR+R PR
Sbjct: 194 QLRSDYSTHRPPPGGRSRGRSRHPR 218
>03_02_0750 +
10909130-10909616,10912257-10912916,10913139-10913544,
10914376-10914757,10914918-10915679,10916106-10916165,
10916695-10917105
Length = 1055
Score = 30.7 bits (66), Expect = 0.69
Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 3/91 (3%)
Frame = +1
Query: 73 RRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGL--MIHSGDPCNDYVNTATR 246
R G++ ++ES VV+G+ KS+ V L ++H G ND V T +
Sbjct: 493 RLVAAGLVSRLVESDDDWETAVVTGRSCPDALKSLLSVAPLNDILHEGSAANDAVETMIK 552
Query: 247 HVLSDKEY*ESRSKSCCRGTSKA-RTARRSH 336
+ S KE +++S S G R R +H
Sbjct: 553 ILNSPKEETQAKSASALAGLFHCRRDLRETH 583
>11_01_0278 - 2068800-2068826,2070001-2070442,2070702-2072047
Length = 604
Score = 30.3 bits (65), Expect = 0.92
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +2
Query: 257 QTRSTRNQGQNHVAVGPARQERPEEATTRPHPGNRAQGRARA 382
+T S R G++ + P R+E + T RP PG+ + A A
Sbjct: 457 RTMSLRGGGESAGSDSPCRREEAKSRTPRPQPGSAGERSAAA 498
>02_05_0237 + 27095817-27097433
Length = 538
Score = 29.9 bits (64), Expect = 1.2
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = -3
Query: 376 GSSLGSVTRMWSGCGFFGPFLPCWSHGNMILTLIPS 269
G+ L +V R GCG+FG + W G + L+PS
Sbjct: 152 GAHLPAVIRALVGCGWFG--IESWIGGRAVFLLLPS 185
>07_01_0214 +
1595917-1596526,1597127-1597140,1598414-1598743,
1598853-1598963,1599113-1599269,1603366-1603619,
1603762-1603960,1604341-1604498
Length = 610
Score = 29.1 bits (62), Expect = 2.1
Identities = 16/35 (45%), Positives = 16/35 (45%)
Frame = -3
Query: 181 TSLIWHVDHAACQIQQLHNHGHQIP**NGEHHSKH 77
T L H AA Q H HGH G HHSKH
Sbjct: 247 TPLALHQAAAAAGPSQYHGHGHPHH-GGGHHHSKH 280
>01_07_0132 -
41298184-41298558,41298648-41298729,41298850-41298977,
41299059-41299157,41299279-41299434,41300709-41300783,
41301962-41302137,41303210-41303252,41303336-41303503,
41303584-41303731,41306316-41306587
Length = 573
Score = 29.1 bits (62), Expect = 2.1
Identities = 15/66 (22%), Positives = 32/66 (48%)
Frame = +1
Query: 67 AVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATR 246
A R A G++ + + G G SG+ RGQ +++ ++G + +Y++ A
Sbjct: 472 AARLAAAGIVGILKKLGRDGSGAASSGRGRGQPRRTVVAIEGGLYQGYPVFREYLDEALV 531
Query: 247 HVLSDK 264
+L ++
Sbjct: 532 EILGEE 537
>02_05_1123 +
34275272-34275331,34275451-34275523,34275631-34275728,
34276012-34276153,34276261-34276361,34276633-34276716,
34276949-34277014,34277102-34277167,34277324-34277404,
34277489-34277566,34277687-34277848,34277936-34278011,
34278111-34278223,34278323-34278751
Length = 542
Score = 28.7 bits (61), Expect = 2.8
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +3
Query: 261 QGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPVPLEPTSEV 404
Q VL I+ K ++ + P P P +EP+ EP P++ S V
Sbjct: 283 QAVLAIEYKRKPEDEESSSSAPLPPPPVSTSESEPEPEPEPVKEVSPV 330
>08_01_0892 -
8778097-8778236,8778390-8778486,8778568-8778747,
8779138-8779247,8781153-8781294,8782298-8782686,
8782752-8782834,8783524-8785244,8785894-8786040,
8786121-8786264,8786669-8786741,8787413-8787633
Length = 1148
Score = 28.3 bits (60), Expect = 3.7
Identities = 15/69 (21%), Positives = 32/69 (46%)
Frame = -1
Query: 249 MSGSSVDVIIARVSRVDHESIYKLH*FGTLTTQLARYNNFTTTGTRFHDETENTIASTTY 70
+ GS +++ V R D +++Y+ G ++ +NN +++G HD N I
Sbjct: 746 IDGSRDELLETDVIRQDIKALYQSIDMGLVSEATVCFNNVSSSGLSVHDTGGNVIGQGDQ 805
Query: 69 SETSDKLVS 43
++ +S
Sbjct: 806 DSEKNRYLS 814
>03_01_0652 +
4771551-4771821,4771931-4772038,4772744-4773024,
4773115-4773369,4773451-4773563,4773640-4773735,
4773844-4773997,4774380-4774697
Length = 531
Score = 28.3 bits (60), Expect = 3.7
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Frame = -3
Query: 355 TRMWSGCGFFGPFLPC--WSHGNMILTLIPSTPCLRAHVW*Q 236
T +WSGC GP + C G +T P P + H+W Q
Sbjct: 464 TNLWSGCNASGP-IHCHPLRSGPKSVTHRPILPSVTKHIWHQ 504
>08_02_1338 - 26244928-26245159,26246420-26247374,26247921-26249187
Length = 817
Score = 27.9 bits (59), Expect = 4.9
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -2
Query: 449 DSGDRLRQRRGREGAHFAGRLEGHGLVLG 363
+ GD+ + +G EG +G GHG V+G
Sbjct: 164 EEGDKGMKVKGEEGCRASGSDSGHGCVIG 192
>08_01_0346 - 3063440-3064189
Length = 249
Score = 27.9 bits (59), Expect = 4.9
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = +1
Query: 31 AESLRYKLIGGLAVRRACYGVLR 99
A S L+GG A ACYGVLR
Sbjct: 221 ARSAARVLLGGWAAMAACYGVLR 243
>06_01_0525 -
3800578-3801018,3801395-3801504,3801608-3801683,
3801757-3801909,3802088-3802159,3802242-3802322,
3802936-3803001,3803117-3803182,3803277-3803327,
3803429-3803512,3803988-3804088,3804188-3804329,
3804820-3804917,3805194-3805263,3805409-3805477
Length = 559
Score = 27.9 bits (59), Expect = 4.9
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = +3
Query: 246 TCALRQGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPVPLEPTSE 401
T A + VL I+ K +++ + P P+P+ EP+ EPV E E
Sbjct: 294 TVAQKDKVLAIEYKKEAEEEEKPASPPPAPEPEPEQEPEPEPEPVKEEAPKE 345
>05_06_0254 -
26706830-26706943,26707063-26707193,26707330-26707417,
26707970-26708087,26708184-26708332,26708787-26708840,
26708963-26709031,26709146-26709246,26709391-26709473,
26709846-26710041,26710171-26710279
Length = 403
Score = 27.9 bits (59), Expect = 4.9
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = -3
Query: 361 SVTRMWSGCGFFGPFLPCWSH 299
S T M S CGF G CW+H
Sbjct: 211 SSTGMQSNCGFEGQVNACWTH 231
>01_01_0213 + 1833221-1835062,1835429-1835558,1835726-1836411
Length = 885
Score = 27.9 bits (59), Expect = 4.9
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +3
Query: 324 PKKPQPDHILVTEPKDEPVPLEPTS 398
P+ +PD +LV P P PL P +
Sbjct: 129 PRADEPDVVLVLPPSQRPPPLSPAA 153
>11_06_0406 - 23192363-23194911,23195152-23195247,23195622-23196090
Length = 1037
Score = 27.5 bits (58), Expect = 6.5
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -3
Query: 211 LQSGS*VHLQTSLIWHVDHAACQIQQLHNHGH 116
+QSG+ LIWH+ + C+I+ H H
Sbjct: 753 IQSGAPRCSHVILIWHIATSLCEIKLAQEHDH 784
>02_01_0137 +
988442-988641,989088-989281,989369-989488,989594-989673,
990244-990510,990840-992458,992571-993327,993560-995506
Length = 1727
Score = 27.5 bits (58), Expect = 6.5
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +3
Query: 261 QGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPK 368
QGVL +++ + +Q +NGP+K + L+TE K
Sbjct: 377 QGVLQLEILRQIALPKQSQNGPRKSRLTISLMTEHK 412
>10_01_0017 -
218188-218261,219262-219379,220348-220932,220996-221163,
221331-221333
Length = 315
Score = 27.1 bits (57), Expect = 8.6
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = +2
Query: 242 PDMCSQTRSTRNQGQNHVAVGPARQERPEEATTRPHPGNRAQGRARAPR 388
PDM + R + Q N+V V P+R+++ + R G R G A R
Sbjct: 248 PDMKEEERKMKKQTTNNVIVFPSRKKKQK----RKEDGRRFSGDQTAAR 292
>05_03_0039 - 7621613-7622695
Length = 360
Score = 27.1 bits (57), Expect = 8.6
Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = +3
Query: 297 PWDQQGKNGPK-KPQPDHILVTEPKDEPVPLEP 392
P + + K PK KP P H EPK EP P EP
Sbjct: 53 PPELEPKPKPKPKPHPKHESKPEPKPEPKP-EP 84
>04_01_0360 - 4720997-4721812
Length = 271
Score = 27.1 bits (57), Expect = 8.6
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = -2
Query: 449 DSGDRLRQRRGREGAHFAGRLEGHGL 372
D G R RQR G G A R +G GL
Sbjct: 168 DGGRRRRQRDGEAGVEAAARGDGDGL 193
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,919,640
Number of Sequences: 37544
Number of extensions: 283357
Number of successful extensions: 1039
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 980
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1034
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1071221400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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