Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30395
         (504 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    25   0.59 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    25   0.59 
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   1.8  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   4.2  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 24.6 bits (51), Expect = 0.59
 Identities = 13/50 (26%), Positives = 21/50 (42%)
 Frame = -1

Query: 204  VDHESIYKLH*FGTLTTQLARYNNFTTTGTRFHDETENTIASTTYSETSD 55
            VD   + K     T+ T L +Y N+T     F    +    + TY +T +
Sbjct: 1162 VDEMEVRKTSALTTVLTGLRKYTNYTIQVLAFTRVGDGVPTTVTYCQTEE 1211


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 24.6 bits (51), Expect = 0.59
 Identities = 13/50 (26%), Positives = 21/50 (42%)
 Frame = -1

Query: 204  VDHESIYKLH*FGTLTTQLARYNNFTTTGTRFHDETENTIASTTYSETSD 55
            VD   + K     T+ T L +Y N+T     F    +    + TY +T +
Sbjct: 1158 VDEMEVRKTSALTTVLTGLRKYTNYTIQVLAFTRVGDGVPTTVTYCQTEE 1207


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
 Frame = +2

Query: 209 ETLAMITSTL--LPDMCSQTRSTRNQGQNHVAVGP 307
           ETL    +TL   P  CSQT    + GQ H  + P
Sbjct: 349 ETLNTKCNTLERTPSKCSQTSVHYSNGQTHSQLCP 383


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = +2

Query: 278  QGQNHVAVGPARQERPEEATTRPHPGNRAQGRARAPRADQ 397
            Q Q  +   P+  +R     T P P N  QG+A+A    Q
Sbjct: 980  QSQQPIMTDPSPFKRGRY--TPPQPANAQQGQAQAQAKPQ 1017


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,468
Number of Sequences: 438
Number of extensions: 2667
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13864083
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)