Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30395
         (504 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g35530.1 68418.m04226 40S ribosomal protein S3 (RPS3C)             145   2e-35
At3g53870.1 68416.m05951 40S ribosomal protein S3 (RPS3B) riboso...   144   4e-35
At2g31610.1 68415.m03862 40S ribosomal protein S3 (RPS3A)             143   5e-35
At1g09830.1 68414.m01105 phosphoribosylamine--glycine ligase (PU...    28   4.1  
At5g48320.1 68418.m05969 DC1 domain-containing protein contains ...    27   9.5  
At3g46050.1 68416.m04983 kelch repeat-containing F-box family pr...    27   9.5  
At1g28420.1 68414.m03494 homeobox transcription factor, putative...    27   9.5  

>At5g35530.1 68418.m04226 40S ribosomal protein S3 (RPS3C)
          Length = 248

 Score =  145 bits (351), Expect = 2e-35
 Identities = 66/85 (77%), Positives = 74/85 (87%)
 Frame = +1

Query: 1   ATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMK 180
           A RGLCAIAQAESLRYKL+GGLAVRRACYGVLRF+MESGA+GCEV+VSGKLR  RAKSMK
Sbjct: 92  ANRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAARAKSMK 151

Query: 181 FVDGLMIHSGDPCNDYVNTATRHVL 255
           F DG M+ SG P  +Y++ A RHVL
Sbjct: 152 FKDGYMVSSGQPTKEYIDAAVRHVL 176



 Score = 63.3 bits (147), Expect = 9e-11
 Identities = 27/50 (54%), Positives = 35/50 (70%)
 Frame = +3

Query: 255 LRQGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPVPLEPTSEV 404
           LRQGVLG+KVKIML WD +GK GP  P PD +++  PK++ V + P   V
Sbjct: 177 LRQGVLGLKVKIMLDWDPKGKQGPMTPLPDVVIIHTPKEDDVYIAPAQVV 226


>At3g53870.1 68416.m05951 40S ribosomal protein S3 (RPS3B) ribosomal
           protein S3a - Xenopus laevis, PIR:R3XL3A
          Length = 249

 Score =  144 bits (348), Expect = 4e-35
 Identities = 65/83 (78%), Positives = 74/83 (89%)
 Frame = +1

Query: 7   RGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFV 186
           RGLCAIAQAESLRYKL+GGLAVRRACYGVLRF+MESGA+GCEV+VSGKLR  RAKSMKF 
Sbjct: 94  RGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAARAKSMKFK 153

Query: 187 DGLMIHSGDPCNDYVNTATRHVL 255
           DG M+ SG P  +Y+++A RHVL
Sbjct: 154 DGYMVSSGQPTKEYIDSAVRHVL 176



 Score = 61.3 bits (142), Expect = 4e-10
 Identities = 26/46 (56%), Positives = 33/46 (71%)
 Frame = +3

Query: 255 LRQGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPVPLEP 392
           LRQGVLGIKVK+ML WD +G +GPK P PD +++  PK+E     P
Sbjct: 177 LRQGVLGIKVKVMLDWDPKGISGPKTPLPDVVIIHSPKEEEAIYAP 222


>At2g31610.1 68415.m03862 40S ribosomal protein S3 (RPS3A)
          Length = 250

 Score =  143 bits (347), Expect = 5e-35
 Identities = 65/83 (78%), Positives = 73/83 (87%)
 Frame = +1

Query: 7   RGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFV 186
           RGLCAIAQAESLRYKL+GGLAVRRACYGVLRF+MESGA+GCEV+VSGKLR  RAKSMKF 
Sbjct: 94  RGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAARAKSMKFK 153

Query: 187 DGLMIHSGDPCNDYVNTATRHVL 255
           DG M+ SG P  +Y++ A RHVL
Sbjct: 154 DGYMVSSGQPTKEYIDAAVRHVL 176



 Score = 64.9 bits (151), Expect = 3e-11
 Identities = 29/46 (63%), Positives = 34/46 (73%)
 Frame = +3

Query: 255 LRQGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPVPLEP 392
           LRQGVLGIKVKIML WD  GK+GPK P PD +++  PKD+ V   P
Sbjct: 177 LRQGVLGIKVKIMLDWDPTGKSGPKTPLPDVVIIHAPKDDVVYSAP 222


>At1g09830.1 68414.m01105 phosphoribosylamine--glycine ligase (PUR2)
           Identical to phosphoribosylamine--glycine ligase,
           chloroplast [precursor] SP:P52420 from [Arabidopsis
           thaliana]
          Length = 532

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +1

Query: 115 GARGCEVVVSGKLRGQRAKSMKFVDG 192
           G+ GC+VVV   L G+ A     VDG
Sbjct: 273 GSAGCQVVVEEFLEGEEASFFALVDG 298


>At5g48320.1 68418.m05969 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 977

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +3

Query: 330 KPQPDHILVTEPKDEPVPLEPTSEV 404
           KPQP+ +   EP+ EP P EP  E+
Sbjct: 154 KPQPELVRDLEPEPEPEP-EPEPEI 177


>At3g46050.1 68416.m04983 kelch repeat-containing F-box family
           protein contains F-box domain Pfam:PF00646 and Kelch
           motif Pfam:PF01344
          Length = 370

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = +3

Query: 69  CTSCLLWCSPFHHGIWCP 122
           C   L+WC P     WCP
Sbjct: 248 CEGVLVWCEPEEDRGWCP 265


>At1g28420.1 68414.m03494 homeobox transcription factor, putative
            similar to homeobox transcription factor Hox7 GI:19486
            [Lycopersicon peruvianum]
          Length = 1703

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +2

Query: 302  GPARQERPEEATTRPHPGNRAQGRAR 379
            GP  QE  +E    P+PGNR + RAR
Sbjct: 1459 GPREQEDQDEVA--PNPGNRNKKRAR 1482


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,991,777
Number of Sequences: 28952
Number of extensions: 211937
Number of successful extensions: 586
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 586
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 898188928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)