Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30394
(836 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0994 - 13067254-13067379,13067483-13067521,13067824-130678... 32 0.65
03_06_0422 + 33818887-33819996 31 1.1
07_03_0954 - 22864240-22864403,22864821-22864935,22865421-22865462 30 2.0
12_02_1152 + 26515422-26515460,26516317-26516454,26518647-265188... 29 4.6
07_03_1191 + 24690936-24691029,24691184-24691377 29 4.6
02_02_0059 - 6432945-6433115,6433975-6434061,6434585-6434787,643... 29 4.6
02_01_0775 + 5775949-5777385 29 4.6
11_01_0662 - 5389746-5390548,5390727-5391368,5391624-5391659,539... 28 8.0
06_02_0028 + 10755164-10755668,10755740-10756283,10756372-10758247 28 8.0
02_05_0675 + 30804143-30804384,30804582-30804752,30806277-30806505 28 8.0
>03_02_0994 -
13067254-13067379,13067483-13067521,13067824-13067893,
13068025-13068116,13068237-13068319,13068590-13068633,
13068682-13068800,13068883-13068915,13069152-13069239,
13069364-13069413
Length = 247
Score = 31.9 bits (69), Expect = 0.65
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +2
Query: 59 VCRQTDRPCSQVCHLLQLCTGATTCSSTHPYTDGTCCPYTALC 187
VC T++P +QVC+ +C G CS+ + D C LC
Sbjct: 51 VC-DTEQPVAQVCYNCGVCMGEYFCSACKFFDDDVRCRCCLLC 92
>03_06_0422 + 33818887-33819996
Length = 369
Score = 31.1 bits (67), Expect = 1.1
Identities = 20/57 (35%), Positives = 30/57 (52%)
Frame = -2
Query: 445 ESEEQQERHHKTEQTHSLRQGETQNGV*EQLLLEGGVPGIADDEGAEDCSNTSSGTS 275
E ++ER + E+T SL + N E ++L+G D+ +D SNTSSG S
Sbjct: 156 ERMRERERERRRERTESLILINSNN---EAIILQGT---FGPDDNQDDSSNTSSGVS 206
>07_03_0954 - 22864240-22864403,22864821-22864935,22865421-22865462
Length = 106
Score = 30.3 bits (65), Expect = 2.0
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +2
Query: 59 VCRQTDRPCSQVCHLLQLCTGATTCSSTHPYTDG 160
+CRQ + C CH++ LC G + S P T G
Sbjct: 38 ICRQVEAGCFAHCHIV-LCKGEPSRSPFRPVTSG 70
>12_02_1152 +
26515422-26515460,26516317-26516454,26518647-26518809,
26519165-26519213,26519315-26519390,26520348-26520473
Length = 196
Score = 29.1 bits (62), Expect = 4.6
Identities = 18/57 (31%), Positives = 25/57 (43%)
Frame = -1
Query: 236 SRVNVLSDRCGLEGPHCRELCRDSRYHLCMGGYCCKWSHQCRVAEDGRPGCRGDQSG 66
S +N+++ RCG HC L + L + H + E G GC DQSG
Sbjct: 20 SMLNIVTVRCG----HCTNLLSVNLRGLMHSAPALQDHHHHHLQESGLSGCFRDQSG 72
>07_03_1191 + 24690936-24691029,24691184-24691377
Length = 95
Score = 29.1 bits (62), Expect = 4.6
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +2
Query: 59 VCRQTDRPCSQV-CHLLQLCTGATTCSSTHPYTDGTCC 169
VC++T+ C+Q CH + L G T S + D CC
Sbjct: 38 VCQKTEYGCTQEKCHQMCLGDGRTVASQYCRHYDTQCC 75
>02_02_0059 -
6432945-6433115,6433975-6434061,6434585-6434787,
6435281-6435392,6435473-6435517,6435622-6435726,
6435946-6435996,6436026-6436103,6437258-6437313,
6437784-6437853,6438288-6438392,6438525-6438637,
6439354-6439534,6439635-6440390
Length = 710
Score = 29.1 bits (62), Expect = 4.6
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Frame = +1
Query: 61 LPPD*SPLQPGLPSSATLHWCDHLQQYPPIHRWYLLSLHSSLQCGPSRPHRS--LRTLTL 234
+PP PL+P +PSS+ H LQ + L +HS +RP S L L
Sbjct: 183 VPPPPPPLEPPVPSSSDYHAKPPLQAV----KSSLFPIHSGSPAATARPPSSHTLHQAHL 238
Query: 235 LPNS 246
+PN+
Sbjct: 239 MPNA 242
>02_01_0775 + 5775949-5777385
Length = 478
Score = 29.1 bits (62), Expect = 4.6
Identities = 14/46 (30%), Positives = 17/46 (36%)
Frame = -1
Query: 146 GGYCCKWSHQCRVAEDGRPGCRGDQSGGRQHFVFIRCGARQQRTPR 9
GG +W Q RV G GC G + CGA P+
Sbjct: 347 GGMVVEWCDQVRVLSHGAVGCFVTHCGWNSTLEAVACGAPMVAVPQ 392
>11_01_0662 -
5389746-5390548,5390727-5391368,5391624-5391659,
5392314-5392377
Length = 514
Score = 28.3 bits (60), Expect = 8.0
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -2
Query: 454 NSLESEEQQERHHKTEQTHSLRQ 386
NS+ E QE+ H E+TH LRQ
Sbjct: 62 NSIFYSESQEQKHVKEETHRLRQ 84
>06_02_0028 + 10755164-10755668,10755740-10756283,10756372-10758247
Length = 974
Score = 28.3 bits (60), Expect = 8.0
Identities = 15/69 (21%), Positives = 28/69 (40%)
Frame = -2
Query: 493 LICRMAVVVFLKVNSLESEEQQERHHKTEQTHSLRQGETQNGV*EQLLLEGGVPGIADDE 314
L C + + + + ++ +T + Q T NG E L GG ++ +
Sbjct: 331 LACIIVLKAIISCQTYSNDRSNNVEEQTSTGNCRAQINTSNGGAESLSSNGGAESVSSNG 390
Query: 313 GAEDCSNTS 287
GAE S+ +
Sbjct: 391 GAESVSSNA 399
>02_05_0675 + 30804143-30804384,30804582-30804752,30806277-30806505
Length = 213
Score = 28.3 bits (60), Expect = 8.0
Identities = 13/49 (26%), Positives = 25/49 (51%)
Frame = -3
Query: 213 PMWSGRTALQRAV*GQQVPSVYGWVLLQVVAPVQSCRRWQTWLQGRSVW 67
P+W G ++ AV G + P+ +G+ ++ P Q+ + W+ VW
Sbjct: 8 PVWHGVWMVEDAVTGDEFPAWHGYGRRRMQPPGQAPAWCRAWIAKDVVW 56
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,106,673
Number of Sequences: 37544
Number of extensions: 506630
Number of successful extensions: 1550
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1549
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2315199948
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -