Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30394
         (836 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58279| Best HMM Match : No HMM Matches (HMM E-Value=.)              64   2e-10
SB_30565| Best HMM Match : Metallothio (HMM E-Value=1.8)               32   0.66 
SB_20479| Best HMM Match : Collagen (HMM E-Value=1)                    29   3.5  
SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.7  
SB_47507| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.7  
SB_16478| Best HMM Match : C2 (HMM E-Value=2.2e-13)                    29   6.2  
SB_58665| Best HMM Match : TSP_1 (HMM E-Value=7.5e-10)                 29   6.2  
SB_48688| Best HMM Match : Ldl_recept_a (HMM E-Value=7.8e-26)          29   6.2  
SB_35286| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.2  
SB_30577| Best HMM Match : Ldl_recept_a (HMM E-Value=2.8e-25)          29   6.2  
SB_57661| Best HMM Match : RRM_1 (HMM E-Value=0.017)                   28   8.2  
SB_28756| Best HMM Match : C1_4 (HMM E-Value=0.095)                    28   8.2  

>SB_58279| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 744

 Score = 63.7 bits (148), Expect = 2e-10
 Identities = 30/30 (100%), Positives = 30/30 (100%)
 Frame = +2

Query: 305 FGSLIIGYARNPSLKQQLFSYAILGFALSE 394
           FGSLIIGYARNPSLKQQLFSYAILGFALSE
Sbjct: 126 FGSLIIGYARNPSLKQQLFSYAILGFALSE 155



 Score = 39.1 bits (87), Expect = 0.004
 Identities = 23/49 (46%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
 Frame = +3

Query: 111 SALVRPLAAVPTHTQMVPAVPTQLS-AVRSFQTTSVTKDIDSAAKFIGA 254
           +A +RP +       +VPA P   + A R FQT+S  +D+DSAAKFIGA
Sbjct: 61  TAAIRPQSQALVKA-VVPASPLLGALASRGFQTSSAVQDVDSAAKFIGA 108


>SB_30565| Best HMM Match : Metallothio (HMM E-Value=1.8)
          Length = 565

 Score = 31.9 bits (69), Expect = 0.66
 Identities = 17/40 (42%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
 Frame = -1

Query: 257 HSTNEFGSRVNVLSDRCGLEGPHCR-ELCRDSRYHLCMGG 141
           H   E   R NVLSD  GLE   CR  LC +  +  C  G
Sbjct: 72  HRQPEASQRCNVLSDAPGLETESCRCTLCDERGFSACRSG 111


>SB_20479| Best HMM Match : Collagen (HMM E-Value=1)
          Length = 1214

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 16/36 (44%), Positives = 19/36 (52%)
 Frame = -2

Query: 475 VVVFLKVNSLESEEQQERHHKTEQTHSLRQGETQNG 368
           +V  LK    ESEE  E  H  EQ H  +Q +T NG
Sbjct: 208 LVPSLKKPRCESEEDDEEEHDLEQCHD-QQKDTSNG 242


>SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5834

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = -1

Query: 206  GLEGPHCRELCRDSRYHLCMG-GYCCKWSHQC 114
            G  G  C +LC+   +++C G G C +W+  C
Sbjct: 5392 GYWGEDCGKLCKGGIWNVCNGHGTCNRWTGDC 5423


>SB_47507| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 917

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
 Frame = -1

Query: 206 GLEGPHCRELCRDSRYHLCMGGYCCKWSHQCRVAEDGR-PGCRGDQSGGRQ 57
           G + P   E CR   +  C    C +++HQC   E+G  P      S GR+
Sbjct: 365 GRDRPTSSEACRSWNFAKCFFPGC-RYTHQCAYCENGNYPARECPSSAGRK 414


>SB_16478| Best HMM Match : C2 (HMM E-Value=2.2e-13)
          Length = 186

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +1

Query: 115 HWCDHLQQYPPIHRWY-LLSLHSSLQCGPSRPHRSLRTL 228
           HW + +    PI RW+ L   H+SL   P+RP+R+ + +
Sbjct: 129 HWNEAMTAKKPIARWHSLREFHNSLL--PTRPNRTSKPI 165


>SB_58665| Best HMM Match : TSP_1 (HMM E-Value=7.5e-10)
          Length = 718

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 17/53 (32%), Positives = 25/53 (47%)
 Frame = +2

Query: 47  KQNAVCRQTDRPCSQVCHLLQLCTGATTCSSTHPYTDGTCCPYTALCSAVLPD 205
           ++  VC  TD+PC  + H ++ C   T   +T P    T C  T   S  +PD
Sbjct: 489 RRERVCSDTDKPCQGLDHEVRECQ-VTRPDTTTPTMPTTLC--TIHYSQXVPD 538


>SB_48688| Best HMM Match : Ldl_recept_a (HMM E-Value=7.8e-26)
          Length = 351

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 128 TCSSTHPYTDGTCCPYTALCSAV 196
           +CSS H   DGTC  ++  C+ V
Sbjct: 111 SCSSRHACADGTCVTWSLTCNGV 133


>SB_35286| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 564

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
 Frame = -1

Query: 254 STNEFGSRVNVLS-DRCGLEGPHCRELCRDSRYHLCMGGYCCKWSHQCRVAEDGRPGCRG 78
           ST E  +R+ ++S D+C  +   CR+ C+ S   + MG  C + + + ++A    P C G
Sbjct: 8   STQEKLTRIAIVSTDKC--KPKRCRQECKKSCPVVRMGKLCIEVTPETKLAAISEPLCIG 65


>SB_30577| Best HMM Match : Ldl_recept_a (HMM E-Value=2.8e-25)
          Length = 147

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 128 TCSSTHPYTDGTCCPYTALCSAV 196
           +CSS H   DGTC  ++  C+ V
Sbjct: 111 SCSSRHACADGTCVTWSLTCNGV 133


>SB_57661| Best HMM Match : RRM_1 (HMM E-Value=0.017)
          Length = 255

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
 Frame = +3

Query: 114 ALVRPLAAVPTHTQMVPAVPTQLSA--VRSFQTTSVTKDIDSAAKFIGAVQRQWE 272
           A+V   A V   +  +PA P ++    + +  TTSV +D +S   F+G V R WE
Sbjct: 129 AVVSFYAKVAFISAFLPAKPPRMDVKTITNGGTTSV-RDSNSVKLFVGQVPRTWE 182


>SB_28756| Best HMM Match : C1_4 (HMM E-Value=0.095)
          Length = 201

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -1

Query: 185 RELCRDSRYHLCMGGYCCKWSHQCR 111
           R  CR    HLC+G   C+W  Q R
Sbjct: 173 RNGCRKCDVHLCVGDCFCEWHQQRR 197


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,209,455
Number of Sequences: 59808
Number of extensions: 611599
Number of successful extensions: 1855
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1848
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2359470773
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)