Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30394
         (836 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g07671.1 68415.m00894 H+-transporting two-sector ATPase, C su...    44   2e-04
At3g16160.1 68416.m02040 tesmin/TSO1-like CXC domain-containing ...    29   3.8  
At1g61610.1 68414.m06942 S-locus lectin protein kinase family pr...    28   6.7  
At4g11170.1 68417.m01809 disease resistance protein (TIR-NBS-LRR...    28   8.8  
At1g67120.1 68414.m07636 midasin-related similar to Midasin (MID...    28   8.8  

>At2g07671.1 68415.m00894 H+-transporting two-sector ATPase, C
           subunit family protein similar to ATPase subunit 9
           [Arabidopsis thaliana] GI:15215920; contains Pfam
           profile PF00137: ATP synthase subunit C
          Length = 85

 Score = 43.6 bits (98), Expect = 2e-04
 Identities = 21/30 (70%), Positives = 23/30 (76%)
 Frame = +2

Query: 305 FGSLIIGYARNPSLKQQLFSYAILGFALSE 394
           F SLI   ARNPSL +Q F YAILGFAL+E
Sbjct: 39  FSSLIHSVARNPSLAKQSFGYAILGFALTE 68


>At3g16160.1 68416.m02040 tesmin/TSO1-like CXC domain-containing
           protein low similarity to cysteine-rich polycomb-like
           protein (cpp1) [Glycine max] GI:4218187; contains Pfam
           profile PF03638: Tesmin/TSO1-like CXC domain
          Length = 360

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = +1

Query: 169 SLHSSLQCGPSRPHRSLR--TLTLLPNSLVLCS 261
           +L S + C P  P+RSL   T TLLP+   LCS
Sbjct: 225 ALGSPMSCSPKLPYRSLMGYTSTLLPDLGDLCS 257


>At1g61610.1 68414.m06942 S-locus lectin protein kinase family
           protein similar to KI domain interacting kinase 1 [Zea
           mays] gi|2735017|gb|AAB93834; contains S-locus
           glycoprotein family domain, Pfam:PF00954
          Length = 842

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 13/23 (56%), Positives = 13/23 (56%)
 Frame = +1

Query: 247 LVLCSDSGSSWFRSWYWNSLRLP 315
           LVLCSDS     R WYW S   P
Sbjct: 135 LVLCSDSDR---RKWYWESFNNP 154


>At4g11170.1 68417.m01809 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1095

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
 Frame = +1

Query: 40  LIKTKCCLPPD*SPLQPGLPSSATLH--WCDHLQQYPPI 150
           L++  CC   +  P    LPS   LH  +C  LQ +P I
Sbjct: 682 LLEMSCCKKLEIIPTNINLPSLEVLHFRYCTRLQTFPEI 720


>At1g67120.1 68414.m07636 midasin-related similar to Midasin
            (MIDAS-containing protein) (Swiss-Prot:Q12019)
            [Saccharomyces cerevisiae]; similar to Midasin
            (MIDAS-containing protein) (Swiss-Prot:Q9NU22) [Homo
            sapiens]; contains Prosite PS00017: ATP/GTP-binding site
            motif A (P-loop)
          Length = 5336

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = -2

Query: 244  NLAAESMSLVTDVVWKDRTAESCVGTAGTICVWVGTAASGRTS 116
            N+A+E + L+ ++         CV     +C+ VG ++SG+TS
Sbjct: 2028 NIASEQLKLLPEIRQNLEAVAHCVQNKW-LCILVGPSSSGKTS 2069


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,339,800
Number of Sequences: 28952
Number of extensions: 389431
Number of successful extensions: 1086
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1036
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1085
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1931371200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)