Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30393
(689 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P26373 Cluster: 60S ribosomal protein L13; n=111; Eukar... 100 7e-20
UniRef50_UPI0000D563A2 Cluster: PREDICTED: similar to 60S riboso... 91 2e-17
UniRef50_Q9FF90 Cluster: 60S ribosomal protein L13-3; n=27; Viri... 85 1e-15
UniRef50_Q4PAD9 Cluster: 60S ribosomal protein L13; n=2; Basidio... 85 2e-15
UniRef50_A2EYN3 Cluster: 60S ribosomal protein L13; n=6; Trichom... 78 2e-13
UniRef50_Q57V55 Cluster: 60S ribosomal protein L13, putative; n=... 78 2e-13
UniRef50_A3FQ93 Cluster: 60S ribosomal protein L13, putative; n=... 76 7e-13
UniRef50_A1D9H8 Cluster: 60S ribosomal protein L13; n=26; Fungi/... 76 7e-13
UniRef50_A0CPH3 Cluster: 60S ribosomal protein L13; n=9; Oligohy... 70 5e-11
UniRef50_Q4X4D3 Cluster: 60S ribosomal protein L13, putative; n=... 68 3e-10
UniRef50_O59931 Cluster: 60S ribosomal protein L13; n=5; Ascomyc... 67 4e-10
UniRef50_Q4N9B5 Cluster: 60S ribosomal protein L13e, putative; n... 63 7e-09
UniRef50_O14377 Cluster: Putative uncharacterized protein; n=1; ... 60 7e-08
UniRef50_Q9AW85 Cluster: 60S ribosomal protein L13; n=1; Guillar... 56 1e-06
UniRef50_UPI00005A0D5A Cluster: PREDICTED: similar to ribosomal ... 54 3e-06
UniRef50_O15616 Cluster: 60S ribosomal protein L13; n=3; Entamoe... 54 4e-06
UniRef50_UPI0000DC2213 Cluster: UPI0000DC2213 related cluster; n... 52 1e-05
UniRef50_Q8SSC1 Cluster: 60S RIBOSOMAL PROTEIN L13; n=1; Encepha... 49 9e-05
UniRef50_Q018B3 Cluster: Chromosome 05 contig 1, DNA sequence; n... 39 0.10
UniRef50_A2YRI3 Cluster: 60S ribosomal protein L13; n=2; Oryza s... 36 0.93
UniRef50_Q1RS46 Cluster: Polyketide synthase type I; n=3; Bacill... 36 1.2
UniRef50_A6PBF3 Cluster: Diguanylate cyclase precursor; n=1; She... 33 8.7
UniRef50_A6GTV9 Cluster: Putative uncharacterized protein; n=1; ... 33 8.7
UniRef50_Q17A66 Cluster: Mixed-lineage leukemia protein, mll; n=... 33 8.7
>UniRef50_P26373 Cluster: 60S ribosomal protein L13; n=111;
Eukaryota|Rep: 60S ribosomal protein L13 - Homo sapiens
(Human)
Length = 211
Score = 99.5 bits (237), Expect = 7e-20
Identities = 45/76 (59%), Positives = 52/76 (68%)
Frame = +2
Query: 35 NNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPTVR 214
N M+ HFHKDWQR V TWFNQPAR+ RR++ R +RPIVRCPTVR
Sbjct: 6 NGMVLKPHFHKDWQRRVATWFNQPARKIRRRKARQAKARRIAPRPASGPIRPIVRCPTVR 65
Query: 215 YHTKVRAGRGFTLLKL 262
YHTKVRAGRGF+L +L
Sbjct: 66 YHTKVRAGRGFSLEEL 81
Score = 99.1 bits (236), Expect = 9e-20
Identities = 49/79 (62%), Positives = 62/79 (78%), Gaps = 1/79 (1%)
Frame = +1
Query: 256 EIRAAXLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILFPQGKXV-LKGEA 432
E+R A ++ ARTIGI+VDPRRRNKS ESLQ NVQR+KEYR++LILFP+ KG++
Sbjct: 80 ELRVAGIHKKVARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDS 139
Query: 433 NEEERKLATXLRGPLMPVQ 489
+ EE KLAT L GP+MPV+
Sbjct: 140 SAEELKLATQLTGPVMPVR 158
Score = 49.6 bits (113), Expect = 7e-05
Identities = 28/46 (60%), Positives = 33/46 (71%)
Frame = +3
Query: 510 ARPITEDEKNFKAYQYLXGARSIAKLVGIRAKRLXDAAENPDDVTK 647
AR ITE+EKNFKA+ L AR+ A+L GIRAKR +AAE DV K
Sbjct: 166 ARVITEEEKNFKAFASLRMARANARLFGIRAKRAKEAAE--QDVEK 209
>UniRef50_UPI0000D563A2 Cluster: PREDICTED: similar to 60S ribosomal
protein L13; n=1; Tribolium castaneum|Rep: PREDICTED:
similar to 60S ribosomal protein L13 - Tribolium
castaneum
Length = 198
Score = 91.1 bits (216), Expect = 2e-17
Identities = 43/80 (53%), Positives = 51/80 (63%)
Frame = +2
Query: 23 MGKGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRC 202
M + NNMIPNGHFHK WQ+ VK WFNQP ++ RRK R LRP+V C
Sbjct: 1 MVRHNNMIPNGHFHKKWQQKVKLWFNQPMKKLRRKALR-AKKSRQLAPKPTELLRPLVHC 59
Query: 203 PTVRYHTKVRAGRGFTLLKL 262
P+ RY +KVRAGRGFT +L
Sbjct: 60 PSERYKSKVRAGRGFTFQEL 79
Score = 62.1 bits (144), Expect = 1e-08
Identities = 28/57 (49%), Positives = 41/57 (71%), Gaps = 1/57 (1%)
Frame = +1
Query: 256 EIRAAXLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILFPQGK-XVLK 423
E++ A ++ +AR+ G+AVDPRRRN+ ES+ N+QR+ EY++RLI P K VLK
Sbjct: 78 ELKQAGMSDKYARSFGVAVDPRRRNRCTESIAANIQRLIEYKSRLIFLPDSKNKVLK 134
>UniRef50_Q9FF90 Cluster: 60S ribosomal protein L13-3; n=27;
Viridiplantae|Rep: 60S ribosomal protein L13-3 -
Arabidopsis thaliana (Mouse-ear cress)
Length = 206
Score = 85.4 bits (202), Expect = 1e-15
Identities = 39/78 (50%), Positives = 50/78 (64%)
Frame = +2
Query: 29 KGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPT 208
K NN+IP+ HF K WQ +VKTWFNQPAR+ RR+ R LRP+V T
Sbjct: 2 KHNNVIPSSHFRKHWQNYVKTWFNQPARKTRRRVARQKKAVKIFPRPTSGPLRPVVHGQT 61
Query: 209 VRYHTKVRAGRGFTLLKL 262
++Y+ KVRAG+GFTL +L
Sbjct: 62 LKYNMKVRAGKGFTLEEL 79
Score = 72.9 bits (171), Expect = 7e-12
Identities = 35/78 (44%), Positives = 54/78 (69%), Gaps = 1/78 (1%)
Frame = +1
Query: 256 EIRAAXLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILFP-QGKXVLKGEA 432
E++ A + A TIGI+VD RR+N+S+E LQ NVQR+K Y+A+L++FP + + V G++
Sbjct: 78 ELKVAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRSRQVKAGDS 137
Query: 433 NEEERKLATXLRGPLMPV 486
EE AT ++G MP+
Sbjct: 138 TPEELANATQVQGDYMPI 155
>UniRef50_Q4PAD9 Cluster: 60S ribosomal protein L13; n=2;
Basidiomycota|Rep: 60S ribosomal protein L13 - Ustilago
maydis (Smut fungus)
Length = 209
Score = 84.6 bits (200), Expect = 2e-15
Identities = 38/75 (50%), Positives = 48/75 (64%)
Frame = +2
Query: 29 KGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPT 208
K NN++ N HF KDWQR VK WF+QP + RR+ R LRP VRCPT
Sbjct: 4 KHNNILHNNHFRKDWQRRVKVWFDQPGAKKRRRTAR-EAKAAKLGLRPVQLLRPAVRCPT 62
Query: 209 VRYHTKVRAGRGFTL 253
+RY+TK+R+GRGFT+
Sbjct: 63 LRYNTKIRSGRGFTI 77
Score = 65.7 bits (153), Expect = 1e-09
Identities = 29/50 (58%), Positives = 41/50 (82%)
Frame = +1
Query: 256 EIRAAXLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILFPQ 405
E++AA L +AR++GI VD RRRNKS ESL++NV+RIK Y+ARL++ P+
Sbjct: 79 EVKAAGLGKKYARSVGIPVDHRRRNKSEESLKLNVERIKAYQARLVVIPK 128
>UniRef50_A2EYN3 Cluster: 60S ribosomal protein L13; n=6;
Trichomonas vaginalis G3|Rep: 60S ribosomal protein L13
- Trichomonas vaginalis G3
Length = 210
Score = 78.2 bits (184), Expect = 2e-13
Identities = 38/78 (48%), Positives = 44/78 (56%)
Frame = +2
Query: 17 VKMGKGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIV 196
++M NN IPN H K W VKT+F+ PAR RR+ R LRPIV
Sbjct: 20 LEMVAKNNQIPNDHLRKYWYHRVKTYFDDPARAQRRRNARNLRAKKIAPRPAEGPLRPIV 79
Query: 197 RCPTVRYHTKVRAGRGFT 250
RCPTVRY+ K R GRGFT
Sbjct: 80 RCPTVRYNMKTRLGRGFT 97
Score = 45.2 bits (102), Expect = 0.002
Identities = 23/54 (42%), Positives = 34/54 (62%)
Frame = +1
Query: 256 EIRAAXLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILFPQGKXV 417
E+ AA +P AR GIAVD RR + ++ NV+R++ Y+ARLI +G+ V
Sbjct: 100 ELVAAGFDPALARFQGIAVDARRAHSKDAMVKQNVERLQAYKARLIKVKKGETV 153
>UniRef50_Q57V55 Cluster: 60S ribosomal protein L13, putative; n=7;
Trypanosomatidae|Rep: 60S ribosomal protein L13,
putative - Trypanosoma brucei
Length = 229
Score = 77.8 bits (183), Expect = 2e-13
Identities = 39/69 (56%), Positives = 50/69 (72%), Gaps = 1/69 (1%)
Frame = +1
Query: 256 EIRAAXLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILFP-QGKXVLKGEA 432
E++AA + P +ARTIGI VD RR+NKS E + INVQR+K Y ++L+LFP K KG+A
Sbjct: 95 ELKAAGVKPRYARTIGIRVDRRRKNKSEEGMNINVQRLKTYMSKLVLFPLNRKKPQKGDA 154
Query: 433 NEEERKLAT 459
EEE K AT
Sbjct: 155 TEEEVKAAT 163
Score = 65.3 bits (152), Expect = 1e-09
Identities = 38/86 (44%), Positives = 48/86 (55%), Gaps = 6/86 (6%)
Frame = +2
Query: 23 MGKGNNMIPNGHFHKDWQRF------VKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXL 184
M KGNN IP+ H K W VK +FNQPA++ RR++ R+ L
Sbjct: 12 MPKGNNAIPHVHQRKHWNPCSSQKGNVKVFFNQPAQKQRRRRLRLLKAKKIFPRPLKA-L 70
Query: 185 RPIVRCPTVRYHTKVRAGRGFTLLKL 262
RP V CPTVRY+ K R GRGF+L +L
Sbjct: 71 RPQVNCPTVRYNMKRRLGRGFSLEEL 96
>UniRef50_A3FQ93 Cluster: 60S ribosomal protein L13, putative; n=2;
Cryptosporidium|Rep: 60S ribosomal protein L13, putative
- Cryptosporidium parvum Iowa II
Length = 207
Score = 76.2 bits (179), Expect = 7e-13
Identities = 36/76 (47%), Positives = 48/76 (63%)
Frame = +2
Query: 35 NNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPTVR 214
NN+IPN H+HK+++R++KTW+NQP R+ R+ R LRPIV PT R
Sbjct: 4 NNVIPNVHYHKNYKRWIKTWYNQPGRKQSRRIAR-QKAVAEAGFRPVGMLRPIVHPPTQR 62
Query: 215 YHTKVRAGRGFTLLKL 262
Y+ K R GRGFTL +L
Sbjct: 63 YNMKTRLGRGFTLEEL 78
Score = 49.6 bits (113), Expect = 7e-05
Identities = 28/60 (46%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Frame = +1
Query: 256 EIRAAXLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILFP-QGKXVLKGEA 432
E+ A +N A +IGIAVD RR + S E+ QINV R+K+Y ++L P +GK KG A
Sbjct: 77 ELSACGINKKAAMSIGIAVDHRRTDLSEETFQINVDRLKKYINGIVLQPRKGKKTKKGFA 136
>UniRef50_A1D9H8 Cluster: 60S ribosomal protein L13; n=26;
Fungi/Metazoa group|Rep: 60S ribosomal protein L13 -
Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / NRRL
181)(Aspergillus fischerianus (strain ATCC 1020 / DSM
3700 / NRRL 181))
Length = 243
Score = 76.2 bits (179), Expect = 7e-13
Identities = 34/68 (50%), Positives = 46/68 (67%)
Frame = +2
Query: 59 FHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPTVRYHTKVRAG 238
FHKDWQR V+ F+QP R++RR++ R+ LRP+VRCPTV+Y+ +VR G
Sbjct: 31 FHKDWQRRVRVHFDQPGRKHRRREARLAKAAAVAPRPVDK-LRPVVRCPTVKYNRRVRVG 89
Query: 239 RGFTLLKL 262
RGFTL +L
Sbjct: 90 RGFTLAEL 97
Score = 59.7 bits (138), Expect = 7e-08
Identities = 29/51 (56%), Positives = 38/51 (74%)
Frame = +1
Query: 253 SEIRAAXLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILFPQ 405
+E++ A + ART+GIAVD RR N S ESL NV R+K+Y+ARLILFP+
Sbjct: 95 AELKEAGIPKKLARTVGIAVDHRRVNYSKESLVANVARLKDYKARLILFPR 145
>UniRef50_A0CPH3 Cluster: 60S ribosomal protein L13; n=9;
Oligohymenophorea|Rep: 60S ribosomal protein L13 -
Paramecium tetraurelia
Length = 208
Score = 70.1 bits (164), Expect = 5e-11
Identities = 33/78 (42%), Positives = 47/78 (60%)
Frame = +2
Query: 29 KGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPT 208
K N +PN H K W RFVKT++NQPA + RR+Q R LRP+VR T
Sbjct: 2 KHNQQLPNAHMRKHWTRFVKTFYNQPAAK-RRRQLRRRAQALSASPRPVELLRPVVRGQT 60
Query: 209 VRYHTKVRAGRGFTLLKL 262
++Y++ + GRGF+L++L
Sbjct: 61 IKYNSVQKLGRGFSLIEL 78
Score = 60.5 bits (140), Expect = 4e-08
Identities = 32/66 (48%), Positives = 45/66 (68%), Gaps = 5/66 (7%)
Frame = +1
Query: 256 EIRAAXLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILFPQ--GK---XVL 420
E++ A LN FART+GI+VD RRRN + E L NV+R+K Y ++L+L+P+ GK V+
Sbjct: 77 ELKEAGLNAAFARTVGISVDHRRRNLNQEELNNNVKRLKAYLSKLVLYPRVAGKPKNGVV 136
Query: 421 KGEANE 438
K NE
Sbjct: 137 KDSTNE 142
>UniRef50_Q4X4D3 Cluster: 60S ribosomal protein L13, putative; n=5;
Plasmodium|Rep: 60S ribosomal protein L13, putative -
Plasmodium chabaudi
Length = 215
Score = 67.7 bits (158), Expect = 3e-10
Identities = 42/118 (35%), Positives = 59/118 (50%)
Frame = +2
Query: 35 NNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPTVR 214
NN++PN H HK WQR+V+ FN+ +R +R+ R L P+V CPT R
Sbjct: 5 NNVLPNVHLHKWWQRYVRVDFNKNIKRKQRRLLR-EKRRKQNGGTPIEKLHPVVHCPTQR 63
Query: 215 YHTKVRAGRGFTLLKLGPXH*TQYLPERLELL*IPVDATSLLNHCKSMFKE*RNTERV 388
Y+ K R G+GFTL ++ + P + I VD N C+ KE N ER+
Sbjct: 64 YNYKTRLGKGFTLEEIKA---VKLTPSAARSIGIIVDKRR-KNRCEESLKE--NAERL 115
Score = 51.2 bits (117), Expect = 2e-05
Identities = 24/52 (46%), Positives = 35/52 (67%)
Frame = +1
Query: 256 EIRAAXLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILFPQGK 411
EI+A L P AR+IGI VD RR+N+ ESL+ N +R+++Y L++ P K
Sbjct: 78 EIKAVKLTPSAARSIGIIVDKRRKNRCEESLKENAERLQKYLNSLVMIPLKK 129
>UniRef50_O59931 Cluster: 60S ribosomal protein L13; n=5;
Ascomycota|Rep: 60S ribosomal protein L13 - Candida
albicans (Yeast)
Length = 202
Score = 66.9 bits (156), Expect = 4e-10
Identities = 32/71 (45%), Positives = 43/71 (60%)
Frame = +2
Query: 50 NGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPTVRYHTKV 229
N HF K WQ V+ F+Q ++ R+Q+R+ LRP+VR PTV+Y+ KV
Sbjct: 11 NNHFRKHWQERVRVHFDQAGKKASRRQSRLRKAAKIAPRPIDA-LRPVVRAPTVKYNRKV 69
Query: 230 RAGRGFTLLKL 262
RAGRGFTL +L
Sbjct: 70 RAGRGFTLAEL 80
Score = 65.7 bits (153), Expect = 1e-09
Identities = 34/85 (40%), Positives = 55/85 (64%)
Frame = +1
Query: 253 SEIRAAXLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILFPQGKXVLKGEA 432
+E++A + P +ARTIGI+VD RR+NKS E+ NV R++EY+++L++F + + +
Sbjct: 78 AELKAVGIAPKYARTIGISVDHRRQNKSQETFDANVARLQEYKSKLVIFDKKTKASEVAS 137
Query: 433 NEEERKLATXLRGPLMPVQQPAPKS 507
E+ AT PV+QPAP+S
Sbjct: 138 FEQVDVSAT------FPVEQPAPES 156
>UniRef50_Q4N9B5 Cluster: 60S ribosomal protein L13e, putative; n=4;
Piroplasmida|Rep: 60S ribosomal protein L13e, putative -
Theileria parva
Length = 205
Score = 62.9 bits (146), Expect = 7e-09
Identities = 29/59 (49%), Positives = 40/59 (67%)
Frame = +1
Query: 256 EIRAAXLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILFPQGKXVLKGEA 432
E++ A L AR++G+AVD RR NK ESL +NV R+K Y ++L+LFP+ K KG A
Sbjct: 78 ELKVAGLGKKVARSVGVAVDHRRTNKCAESLNLNVNRLKTYLSKLVLFPRKKHAKKGFA 136
Score = 52.0 bits (119), Expect = 1e-05
Identities = 32/80 (40%), Positives = 42/80 (52%)
Frame = +2
Query: 23 MGKGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRC 202
M K NNM+ + H K RFVK NQ ++ RR+ R LRP+V
Sbjct: 1 MVKHNNMLSDVHRVKCSHRFVKPVLNQAGKKKRRRLAR-QRKAAASGLTPTGYLRPLVHM 59
Query: 203 PTVRYHTKVRAGRGFTLLKL 262
P+ RY+ K+R GRGFTL +L
Sbjct: 60 PSRRYNYKLRFGRGFTLQEL 79
>UniRef50_O14377 Cluster: Putative uncharacterized protein; n=1;
Schizosaccharomyces pombe|Rep: Putative uncharacterized
protein - Schizosaccharomyces pombe (Fission yeast)
Length = 70
Score = 59.7 bits (138), Expect = 7e-08
Identities = 21/28 (75%), Positives = 25/28 (89%)
Frame = +2
Query: 44 IPNGHFHKDWQRFVKTWFNQPARRYRRK 127
+PN HFHKDWQR+VKTWFNQP R+ RR+
Sbjct: 12 LPNAHFHKDWQRYVKTWFNQPGRKLRRQ 39
>UniRef50_Q9AW85 Cluster: 60S ribosomal protein L13; n=1; Guillardia
theta|Rep: 60S ribosomal protein L13 - Guillardia theta
(Cryptomonas phi)
Length = 127
Score = 55.6 bits (128), Expect = 1e-06
Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Frame = +2
Query: 53 GHFHKDWQRFVKTWFNQPARRY-RRKQNRIXXXXXXXXXXXXXXLRPIVRCPTVRYHTKV 229
GHF K W+ V T FNQP + RRK + L+P+V+CPT ++TK+
Sbjct: 10 GHFRKKWKNLVITNFNQPILKIKRRKIRKNKKKNFLKKAIFYKKLKPLVKCPTRMHNTKI 69
Query: 230 RAGRGFTLLKL 262
+ GRGF++ ++
Sbjct: 70 KLGRGFSIQEI 80
>UniRef50_UPI00005A0D5A Cluster: PREDICTED: similar to ribosomal
protein L13 isoform 4; n=1; Canis lupus familiaris|Rep:
PREDICTED: similar to ribosomal protein L13 isoform 4 -
Canis familiaris
Length = 102
Score = 54.0 bits (124), Expect = 3e-06
Identities = 22/30 (73%), Positives = 23/30 (76%)
Frame = +2
Query: 35 NNMIPNGHFHKDWQRFVKTWFNQPARRYRR 124
N MI HFHKDWQR V TWFNQPAR+ RR
Sbjct: 6 NGMILKPHFHKDWQRRVATWFNQPARKIRR 35
>UniRef50_O15616 Cluster: 60S ribosomal protein L13; n=3; Entamoeba
histolytica|Rep: 60S ribosomal protein L13 - Entamoeba
histolytica
Length = 138
Score = 53.6 bits (123), Expect = 4e-06
Identities = 27/68 (39%), Positives = 36/68 (52%)
Frame = +2
Query: 59 FHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPTVRYHTKVRAG 238
F KDW+ V TW QP R+ RR Q R+ L+P V C R++ K+R G
Sbjct: 12 FGKDWRSKVHTWVQQPFRKIRRHQTRV-EKAKSVFPATIKSLKPSVHCMNQRFNYKLRLG 70
Query: 239 RGFTLLKL 262
RGF+L +L
Sbjct: 71 RGFSLKEL 78
Score = 53.6 bits (123), Expect = 4e-06
Identities = 27/47 (57%), Positives = 32/47 (68%)
Frame = +1
Query: 256 EIRAAXLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLIL 396
E+RAA ++ ARTIGIAVDPRR+ S E L N QR+ EY RL L
Sbjct: 77 ELRAAKIDKNLARTIGIAVDPRRKESSKECLTRNAQRLTEYMNRLCL 123
>UniRef50_UPI0000DC2213 Cluster: UPI0000DC2213 related cluster; n=1;
Rattus norvegicus|Rep: UPI0000DC2213 UniRef100 entry -
Rattus norvegicus
Length = 173
Score = 52.0 bits (119), Expect = 1e-05
Identities = 21/24 (87%), Positives = 23/24 (95%)
Frame = +2
Query: 182 LRPIVRCPTVRYHTKVRAGRGFTL 253
+RPIVRCPTVRYHTKVR GRGF+L
Sbjct: 13 IRPIVRCPTVRYHTKVRGGRGFSL 36
Score = 40.3 bits (90), Expect = 0.043
Identities = 20/65 (30%), Positives = 38/65 (58%)
Frame = +1
Query: 256 EIRAAXLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILFPQGKXVLKGEAN 435
EIR A ++ ARTI I+VDP+++ K E + +R+ E + I++P+ + + +
Sbjct: 38 EIRLAGIHKKMARTIDISVDPKKKKKKKERKKEKNERVTETNQKDIIYPKREKEREKKGM 97
Query: 436 EEERK 450
+E +K
Sbjct: 98 KEGKK 102
>UniRef50_Q8SSC1 Cluster: 60S RIBOSOMAL PROTEIN L13; n=1;
Encephalitozoon cuniculi|Rep: 60S RIBOSOMAL PROTEIN L13
- Encephalitozoon cuniculi
Length = 163
Score = 49.2 bits (112), Expect = 9e-05
Identities = 26/74 (35%), Positives = 35/74 (47%)
Frame = +2
Query: 29 KGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPT 208
KGN+ +PN HF K + + P + R + LRPIVRCPT
Sbjct: 2 KGNHALPNNHFRKTSLKI--RIHHDPETKARVMAEKKLRKAKALFPMPLKKLRPIVRCPT 59
Query: 209 VRYHTKVRAGRGFT 250
++Y+ R GRGFT
Sbjct: 60 IKYNRNERLGRGFT 73
Score = 43.6 bits (98), Expect = 0.005
Identities = 30/84 (35%), Positives = 44/84 (52%)
Frame = +1
Query: 250 SSEIRAAXLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILFPQGKXVLKGE 429
++E A L+ AR +GIAVD RRR+ + E+ NV+RIK Y ++ ++ K E
Sbjct: 74 AAECEKAGLDYRHARRLGIAVDLRRRDTNQEAFDKNVERIKTYLGKITIYESVK-----E 128
Query: 430 ANEEERKLATXLRGPLMPVQQPAP 501
A E K T +MP +P P
Sbjct: 129 ARESGAKPYTK---EIMPFVKPKP 149
>UniRef50_Q018B3 Cluster: Chromosome 05 contig 1, DNA sequence; n=1;
Ostreococcus tauri|Rep: Chromosome 05 contig 1, DNA
sequence - Ostreococcus tauri
Length = 527
Score = 39.1 bits (87), Expect = 0.10
Identities = 19/34 (55%), Positives = 20/34 (58%)
Frame = -3
Query: 261 NFRRVNPLPARTLVWYRTVGHRTIGRNGPAAGRG 160
N V P P R L YR VG TIGR+ PA GRG
Sbjct: 410 NSSSVKPRPRRVLKLYRCVGGCTIGRSAPATGRG 443
>UniRef50_A2YRI3 Cluster: 60S ribosomal protein L13; n=2; Oryza
sativa|Rep: 60S ribosomal protein L13 - Oryza sativa
subsp. indica (Rice)
Length = 138
Score = 35.9 bits (79), Expect = 0.93
Identities = 15/25 (60%), Positives = 20/25 (80%)
Frame = +2
Query: 188 PIVRCPTVRYHTKVRAGRGFTLLKL 262
PIV+C T++Y+ K RAGRGF L +L
Sbjct: 47 PIVQCQTLKYNMKSRAGRGFILEEL 71
>UniRef50_Q1RS46 Cluster: Polyketide synthase type I; n=3;
Bacillus|Rep: Polyketide synthase type I - Bacillus
amyloliquefaciens
Length = 1917
Score = 35.5 bits (78), Expect = 1.2
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
Frame = +1
Query: 355 NVQRIKEYRARLILF-----PQGKXVLKGEANEEERKLATXLRGPLMPVQQPAPKSVQD 516
N +R+KEY ARL++F P+G L + + + +L LRG L V A SV D
Sbjct: 895 NPERLKEYAARLLMFLKDEAPEGSGPLYDKIDTMQNQLEDALRGVLAEVLHVASGSVDD 953
>UniRef50_A6PBF3 Cluster: Diguanylate cyclase precursor; n=1;
Shewanella sediminis HAW-EB3|Rep: Diguanylate cyclase
precursor - Shewanella sediminis HAW-EB3
Length = 467
Score = 32.7 bits (71), Expect = 8.7
Identities = 24/85 (28%), Positives = 43/85 (50%)
Frame = -3
Query: 435 IGLTLQHXFALREQYKTRSVFLYSLNIDLQ*FNRLVASTGIYSNSNRSGKYWVQXCGPNF 256
+G +L + LR+ +R+ L LN++LQ + + TGIY NR +Y+++
Sbjct: 273 LGFSLLYILQLRKTVSSRTAELRQLNLELQHLASIDSLTGIY---NR--RYFIRSLKDAC 327
Query: 255 RRVNPLPARTLVWYRTVGHRTIGRN 181
R +N + TL+ + +TI N
Sbjct: 328 RTMNEEASLTLLLFDIDKFKTINDN 352
>UniRef50_A6GTV9 Cluster: Putative uncharacterized protein; n=1;
Limnobacter sp. MED105|Rep: Putative uncharacterized
protein - Limnobacter sp. MED105
Length = 130
Score = 32.7 bits (71), Expect = 8.7
Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Frame = -3
Query: 384 RSVFLYSLNIDLQ*FNRLVASTGIYSNSNRSGK---YWVQXCGPNFRRVN 244
R+ L ++N+++ N++ A T + + R+GK YWV G ++VN
Sbjct: 63 RTTLLNAVNLNISRLNKVCADTHVGNREKRNGKGGQYWVNALGGMLKKVN 112
>UniRef50_Q17A66 Cluster: Mixed-lineage leukemia protein, mll; n=2;
Culicidae|Rep: Mixed-lineage leukemia protein, mll -
Aedes aegypti (Yellowfever mosquito)
Length = 2874
Score = 32.7 bits (71), Expect = 8.7
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Frame = +1
Query: 391 ILFPQGKXVLKGEANEEERKLATXLRGPLMPVQQPAP-KSVQDLSLKMKRTSKLI 552
I FP G V+K E+NEE++ + P++P+ P P + + +SL R+ LI
Sbjct: 2016 IHFP-GLRVIKEESNEEDQTMIFKRMSPIIPIVAPIPIRLKKGISLSSDRSLSLI 2069
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 650,800,404
Number of Sequences: 1657284
Number of extensions: 12371057
Number of successful extensions: 28607
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 27897
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28586
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54132236449
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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