Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30393
         (689 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.05 |rpl13||60S ribosomal protein L13|Schizosaccharomyces...    91   1e-19
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb...    28   1.5  

>SPAC664.05 |rpl13||60S ribosomal protein L13|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 208

 Score = 91.5 bits (217), Expect = 1e-19
 Identities = 41/73 (56%), Positives = 50/73 (68%)
 Frame = +2

Query: 44  IPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPTVRYHT 223
           +PN HFHKDWQR+VKTWFNQP R+ RR+Q R               +RP V+ PT+RY+ 
Sbjct: 9   LPNAHFHKDWQRYVKTWFNQPGRKLRRRQAR-QTKAAKIAPRPVEAIRPAVKPPTIRYNM 67

Query: 224 KVRAGRGFTLLKL 262
           KVRAGRGFTL +L
Sbjct: 68  KVRAGRGFTLEEL 80



 Score = 62.9 bits (146), Expect = 4e-11
 Identities = 38/94 (40%), Positives = 57/94 (60%), Gaps = 1/94 (1%)
 Frame = +1

Query: 256 EIRAAXLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILFP-QGKXVLKGEA 432
           E++AA ++   A TIGI VD RRRN+S ESLQ NV+RIK Y A LI+FP +     KG+A
Sbjct: 79  ELKAAGVSRRVASTIGIPVDHRRRNRSEESLQRNVERIKVYLAHLIVFPRKAGQPKKGDA 138

Query: 433 NEEERKLATXLRGPLMPVQQPAPKSVQDLSLKMK 534
            +      T +   ++P+ Q A +  + ++ + K
Sbjct: 139 TDVSGAEQTDV-AAVLPITQEAVEEAKPITEEAK 171



 Score = 35.1 bits (77), Expect = 0.010
 Identities = 17/42 (40%), Positives = 23/42 (54%)
 Frame = +3

Query: 510 ARPITEDEKNFKAYQYLXGARSIAKLVGIRAKRLXDAAENPD 635
           A+PITE+ KNF A+  L   R+ A+  G RA      AE  +
Sbjct: 163 AKPITEEAKNFNAFSTLSNERAYARYAGARAAFQKKRAEEAE 204


>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1283

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 4/40 (10%)
 Frame = -2

Query: 244  SSTGAYFSM----VPNSWASHYRT*RPSCRTWSYGLSFLY 137
            +STG+Y  M    +   W S   T    C TWSY  S+ Y
Sbjct: 1219 TSTGSYICMPHFQIQYDWCSAGVTDMSECNTWSYQKSYDY 1258


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,701,015
Number of Sequences: 5004
Number of extensions: 51852
Number of successful extensions: 130
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)