BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdV30393 (689 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 06_01_0110 - 866728-866952,867035-867193,867315-867448,868225-86... 95 6e-20 03_05_0108 - 20887146-20887370,20887460-20887618,20887930-208880... 95 6e-20 01_01_0324 - 2613396-2613452,2613658-2613750,2614045-2614236,261... 29 2.6 01_06_1481 - 37675793-37677325 28 6.1 01_01_1166 + 9287840-9288040,9289752-9289799,9292166-9292282,929... 28 6.1 >06_01_0110 - 866728-866952,867035-867193,867315-867448,868225-868333 Length = 208 Score = 94.7 bits (225), Expect = 6e-20 Identities = 44/80 (55%), Positives = 53/80 (66%) Frame = +2 Query: 23 MGKGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRC 202 M K NN+IPNGHF K WQ +VKTWFNQPAR+ RR+ R LRPIV+C Sbjct: 1 MVKHNNVIPNGHFKKHWQNYVKTWFNQPARKQRRRIARQKKAVKIFPRPTSGPLRPIVQC 60 Query: 203 PTVRYHTKVRAGRGFTLLKL 262 T++Y+ K RAGRGFTL +L Sbjct: 61 QTLKYNMKSRAGRGFTLEEL 80 Score = 81.8 bits (193), Expect = 5e-16 Identities = 39/87 (44%), Positives = 61/87 (70%), Gaps = 1/87 (1%) Frame = +1 Query: 256 EIRAAXLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILFP-QGKXVLKGEA 432 E++AA + FA TIGI+VD RR+N+S+E LQ NVQR+K Y+A+L++FP + + V G++ Sbjct: 79 ELKAAGIPKKFAPTIGISVDHRRKNRSLEGLQANVQRLKTYKAKLVIFPRRARKVKAGDS 138 Query: 433 NEEERKLATXLRGPLMPVQQPAPKSVQ 513 EE AT ++G MP+ + +SV+ Sbjct: 139 TPEELATATQVQGDYMPITRGEKRSVE 165 Score = 28.3 bits (60), Expect = 6.1 Identities = 14/34 (41%), Positives = 19/34 (55%) Frame = +3 Query: 519 ITEDEKNFKAYQYLXGARSIAKLVGIRAKRLXDA 620 +T+D K FKAY L R + +G R KR +A Sbjct: 169 VTDDMKAFKAYAKLRVERMNQRHIGARQKRAAEA 202 >03_05_0108 - 20887146-20887370,20887460-20887618,20887930-20888063, 20888597-20888705 Length = 208 Score = 94.7 bits (225), Expect = 6e-20 Identities = 44/80 (55%), Positives = 53/80 (66%) Frame = +2 Query: 23 MGKGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRC 202 M K NN+IPNGHF K WQ +VKTWFNQPAR+ RR+ R LRPIV+C Sbjct: 1 MVKHNNVIPNGHFKKHWQNYVKTWFNQPARKQRRRIARQKKAVKIFPRPTSGPLRPIVQC 60 Query: 203 PTVRYHTKVRAGRGFTLLKL 262 T++Y+ K RAGRGFTL +L Sbjct: 61 QTLKYNMKSRAGRGFTLEEL 80 Score = 80.6 bits (190), Expect = 1e-15 Identities = 38/87 (43%), Positives = 61/87 (70%), Gaps = 1/87 (1%) Frame = +1 Query: 256 EIRAAXLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILFP-QGKXVLKGEA 432 E++AA + +A TIGI+VD RR+N+S+E LQ NVQR+K Y+A+L++FP + + V G++ Sbjct: 79 ELKAAGIPKKYAPTIGISVDHRRKNRSLEGLQANVQRLKTYKAKLVIFPRRARKVKAGDS 138 Query: 433 NEEERKLATXLRGPLMPVQQPAPKSVQ 513 EE AT ++G MP+ + +SV+ Sbjct: 139 TAEELATATQVQGDYMPIARGEKRSVE 165 >01_01_0324 - 2613396-2613452,2613658-2613750,2614045-2614236, 2614325-2614398,2615846-2616098,2616179-2616249, 2616878-2617042,2617440-2617469,2617867-2617947, 2618047-2618272 Length = 413 Score = 29.5 bits (63), Expect = 2.6 Identities = 15/35 (42%), Positives = 18/35 (51%) Frame = +1 Query: 241 RIHSSEIRAAXLNPVFARTIGIAVDPRRRNKSVES 345 R HS R PV A G+AV RRR +VE+ Sbjct: 40 RSHSKNCRRKMKMPVVAEEAGVAVHKRRRGLAVEN 74 >01_06_1481 - 37675793-37677325 Length = 510 Score = 28.3 bits (60), Expect = 6.1 Identities = 11/23 (47%), Positives = 17/23 (73%) Frame = -2 Query: 658 AVGAFVTSSGFSAASXNLLARIP 590 + GAFVT G+++AS + AR+P Sbjct: 363 STGAFVTHCGWNSASEGITARVP 385 >01_01_1166 + 9287840-9288040,9289752-9289799,9292166-9292282, 9293018-9293700,9295214-9297190,9298330-9298441, 9299848-9299904 Length = 1064 Score = 28.3 bits (60), Expect = 6.1 Identities = 13/37 (35%), Positives = 20/37 (54%) Frame = +1 Query: 337 VESLQINVQRIKEYRARLILFPQGKXVLKGEANEEER 447 ++SL+ VQR+ E R R +L P G ++E R Sbjct: 182 IQSLRTRVQRVSERRLRYMLNPTGSLSSSNYIDQERR 218 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 17,432,189 Number of Sequences: 37544 Number of extensions: 340544 Number of successful extensions: 751 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 733 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 749 length of database: 14,793,348 effective HSP length: 80 effective length of database: 11,789,828 effective search space used: 1756684372 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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