Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30393
         (689 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0110 - 866728-866952,867035-867193,867315-867448,868225-86...    95   6e-20
03_05_0108 - 20887146-20887370,20887460-20887618,20887930-208880...    95   6e-20
01_01_0324 - 2613396-2613452,2613658-2613750,2614045-2614236,261...    29   2.6  
01_06_1481 - 37675793-37677325                                         28   6.1  
01_01_1166 + 9287840-9288040,9289752-9289799,9292166-9292282,929...    28   6.1  

>06_01_0110 -
           866728-866952,867035-867193,867315-867448,868225-868333
          Length = 208

 Score = 94.7 bits (225), Expect = 6e-20
 Identities = 44/80 (55%), Positives = 53/80 (66%)
 Frame = +2

Query: 23  MGKGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRC 202
           M K NN+IPNGHF K WQ +VKTWFNQPAR+ RR+  R               LRPIV+C
Sbjct: 1   MVKHNNVIPNGHFKKHWQNYVKTWFNQPARKQRRRIARQKKAVKIFPRPTSGPLRPIVQC 60

Query: 203 PTVRYHTKVRAGRGFTLLKL 262
            T++Y+ K RAGRGFTL +L
Sbjct: 61  QTLKYNMKSRAGRGFTLEEL 80



 Score = 81.8 bits (193), Expect = 5e-16
 Identities = 39/87 (44%), Positives = 61/87 (70%), Gaps = 1/87 (1%)
 Frame = +1

Query: 256 EIRAAXLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILFP-QGKXVLKGEA 432
           E++AA +   FA TIGI+VD RR+N+S+E LQ NVQR+K Y+A+L++FP + + V  G++
Sbjct: 79  ELKAAGIPKKFAPTIGISVDHRRKNRSLEGLQANVQRLKTYKAKLVIFPRRARKVKAGDS 138

Query: 433 NEEERKLATXLRGPLMPVQQPAPKSVQ 513
             EE   AT ++G  MP+ +   +SV+
Sbjct: 139 TPEELATATQVQGDYMPITRGEKRSVE 165



 Score = 28.3 bits (60), Expect = 6.1
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +3

Query: 519 ITEDEKNFKAYQYLXGARSIAKLVGIRAKRLXDA 620
           +T+D K FKAY  L   R   + +G R KR  +A
Sbjct: 169 VTDDMKAFKAYAKLRVERMNQRHIGARQKRAAEA 202


>03_05_0108 -
           20887146-20887370,20887460-20887618,20887930-20888063,
           20888597-20888705
          Length = 208

 Score = 94.7 bits (225), Expect = 6e-20
 Identities = 44/80 (55%), Positives = 53/80 (66%)
 Frame = +2

Query: 23  MGKGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRC 202
           M K NN+IPNGHF K WQ +VKTWFNQPAR+ RR+  R               LRPIV+C
Sbjct: 1   MVKHNNVIPNGHFKKHWQNYVKTWFNQPARKQRRRIARQKKAVKIFPRPTSGPLRPIVQC 60

Query: 203 PTVRYHTKVRAGRGFTLLKL 262
            T++Y+ K RAGRGFTL +L
Sbjct: 61  QTLKYNMKSRAGRGFTLEEL 80



 Score = 80.6 bits (190), Expect = 1e-15
 Identities = 38/87 (43%), Positives = 61/87 (70%), Gaps = 1/87 (1%)
 Frame = +1

Query: 256 EIRAAXLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILFP-QGKXVLKGEA 432
           E++AA +   +A TIGI+VD RR+N+S+E LQ NVQR+K Y+A+L++FP + + V  G++
Sbjct: 79  ELKAAGIPKKYAPTIGISVDHRRKNRSLEGLQANVQRLKTYKAKLVIFPRRARKVKAGDS 138

Query: 433 NEEERKLATXLRGPLMPVQQPAPKSVQ 513
             EE   AT ++G  MP+ +   +SV+
Sbjct: 139 TAEELATATQVQGDYMPIARGEKRSVE 165


>01_01_0324 -
           2613396-2613452,2613658-2613750,2614045-2614236,
           2614325-2614398,2615846-2616098,2616179-2616249,
           2616878-2617042,2617440-2617469,2617867-2617947,
           2618047-2618272
          Length = 413

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = +1

Query: 241 RIHSSEIRAAXLNPVFARTIGIAVDPRRRNKSVES 345
           R HS   R     PV A   G+AV  RRR  +VE+
Sbjct: 40  RSHSKNCRRKMKMPVVAEEAGVAVHKRRRGLAVEN 74


>01_06_1481 - 37675793-37677325
          Length = 510

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = -2

Query: 658 AVGAFVTSSGFSAASXNLLARIP 590
           + GAFVT  G+++AS  + AR+P
Sbjct: 363 STGAFVTHCGWNSASEGITARVP 385


>01_01_1166 +
           9287840-9288040,9289752-9289799,9292166-9292282,
           9293018-9293700,9295214-9297190,9298330-9298441,
           9299848-9299904
          Length = 1064

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +1

Query: 337 VESLQINVQRIKEYRARLILFPQGKXVLKGEANEEER 447
           ++SL+  VQR+ E R R +L P G        ++E R
Sbjct: 182 IQSLRTRVQRVSERRLRYMLNPTGSLSSSNYIDQERR 218


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,432,189
Number of Sequences: 37544
Number of extensions: 340544
Number of successful extensions: 751
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 733
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 749
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)