Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30393
         (689 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19135| Best HMM Match : Ribosomal_L13e (HMM E-Value=0)             107   1e-23
SB_12085| Best HMM Match : TBP (HMM E-Value=3.5e-35)                   33   0.17 
SB_22350| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_14419| Best HMM Match : E1-E2_ATPase (HMM E-Value=0)                29   3.6  

>SB_19135| Best HMM Match : Ribosomal_L13e (HMM E-Value=0)
          Length = 600

 Score =  107 bits (256), Expect = 1e-23
 Identities = 48/78 (61%), Positives = 56/78 (71%)
 Frame = +2

Query: 29  KGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPT 208
           K NN+IPNGHFHKDWQR+VKTWF+QP R+ RR+  R               LRPIVRCPT
Sbjct: 4   KRNNIIPNGHFHKDWQRYVKTWFDQPGRKKRRRVARQIKAAKIAPRPVAGSLRPIVRCPT 63

Query: 209 VRYHTKVRAGRGFTLLKL 262
            +Y+TKVRAGRGFTL +L
Sbjct: 64  FKYNTKVRAGRGFTLDEL 81



 Score = 77.4 bits (182), Expect = 1e-14
 Identities = 40/98 (40%), Positives = 65/98 (66%), Gaps = 2/98 (2%)
 Frame = +1

Query: 256 EIRAAXLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILFP-QGKXVLKGEA 432
           E++AA +    A TIGIAVD RR+N+S ESLQ NVQR+KEY+++LI+FP +     +G++
Sbjct: 80  ELKAAGIPRKVAPTIGIAVDHRRKNRSAESLQANVQRLKEYKSKLIVFPRKANKPKQGDS 139

Query: 433 NEEERKLATXLRGPLMPV-QQPAPKSVQDLSLKMKRTS 543
              +   A  L+GP+MP+ Q+  P   + ++   K+++
Sbjct: 140 EAADLANAVQLQGPVMPIPQESVPIKARPITEDEKKSA 177


>SB_12085| Best HMM Match : TBP (HMM E-Value=3.5e-35)
          Length = 440

 Score = 33.5 bits (73), Expect = 0.17
 Identities = 17/51 (33%), Positives = 26/51 (50%)
 Frame = +1

Query: 304 IAVDPRRRNKSVESLQINVQRIKEYRARLILFPQGKXVLKGEANEEERKLA 456
           IA+  R    + +     + RI+E R   ++F  GK V  G  +EE+ KLA
Sbjct: 301 IALQARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQSKLA 351


>SB_22350| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1967

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 20/72 (27%), Positives = 35/72 (48%)
 Frame = +1

Query: 340  ESLQINVQRIKEYRARLILFPQGKXVLKGEANEEERKLATXLRGPLMPVQQPAPKSVQDL 519
            ESL++  ++IKE +A+L+     + + + E   +E      LR  L         S + L
Sbjct: 1124 ESLEVANKKIKELQAQLL---TARELTQQECVSKEASEVANLRDALEKANSKVAHSEEIL 1180

Query: 520  SLKMKRTSKLIN 555
            +LK  R  +L+N
Sbjct: 1181 ALKAARLKELVN 1192


>SB_14419| Best HMM Match : E1-E2_ATPase (HMM E-Value=0)
          Length = 543

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = -3

Query: 336 RLVASTGI-YSNSNRSGKYWVQXCGPNFRRVNPLPARTLVWYRT 208
           R++ S G    NS+ +G+   Q  GP F   NPL  + L ++ T
Sbjct: 171 RVIESKGFKVDNSSLTGESEPQARGPEFTHENPLETKNLAFFST 214


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,936,199
Number of Sequences: 59808
Number of extensions: 374025
Number of successful extensions: 902
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 816
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 894
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)