Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30393
         (689 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g49010.2 68416.m05354 60S ribosomal protein L13 (RPL13B) / br...    87   8e-18
At3g49010.1 68416.m05353 60S ribosomal protein L13 (RPL13B) / br...    87   8e-18
At5g23900.1 68418.m02807 60S ribosomal protein L13 (RPL13D)            85   3e-17
At3g48960.1 68416.m05348 60S ribosomal protein L13 (RPL13C) 60S ...    79   3e-15
At2g02060.1 68415.m00141 calcium-dependent protein kinase-relate...    29   2.2  
At1g66470.1 68414.m07551 basic helix-loop-helix (bHLH) family pr...    29   3.8  
At5g65110.1 68418.m08191 acyl-CoA oxidase (ACX2) identical to ac...    28   5.1  

>At3g49010.2 68416.m05354 60S ribosomal protein L13 (RPL13B) /
           breast basic conserved protein 1-related (BBC1)
          Length = 206

 Score = 87.4 bits (207), Expect = 8e-18
 Identities = 40/78 (51%), Positives = 50/78 (64%)
 Frame = +2

Query: 29  KGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPT 208
           K NN+IPNGHF K WQ +VKTWFNQPAR+ RR+  R               LRP+V   T
Sbjct: 2   KHNNVIPNGHFKKHWQNYVKTWFNQPARKTRRRIARQKKAVKIFPRPTSGPLRPVVHGQT 61

Query: 209 VRYHTKVRAGRGFTLLKL 262
           ++Y+ KVR G+GFTL +L
Sbjct: 62  LKYNMKVRTGKGFTLEEL 79



 Score = 75.4 bits (177), Expect = 3e-14
 Identities = 36/83 (43%), Positives = 56/83 (67%), Gaps = 1/83 (1%)
 Frame = +1

Query: 256 EIRAAXLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILFP-QGKXVLKGEA 432
           E++AA +    A TIGIAVD RR+N+S+E LQ NVQR+K Y+ +L++FP + + V  G++
Sbjct: 78  ELKAAGIPKKLAPTIGIAVDHRRKNRSLEGLQTNVQRLKTYKTKLVIFPRRARKVKAGDS 137

Query: 433 NEEERKLATXLRGPLMPVQQPAP 501
             EE   AT ++G  +P+ +  P
Sbjct: 138 TPEELANATQVQGDYLPIVREKP 160


>At3g49010.1 68416.m05353 60S ribosomal protein L13 (RPL13B) /
           breast basic conserved protein 1-related (BBC1)
          Length = 206

 Score = 87.4 bits (207), Expect = 8e-18
 Identities = 40/78 (51%), Positives = 50/78 (64%)
 Frame = +2

Query: 29  KGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPT 208
           K NN+IPNGHF K WQ +VKTWFNQPAR+ RR+  R               LRP+V   T
Sbjct: 2   KHNNVIPNGHFKKHWQNYVKTWFNQPARKTRRRIARQKKAVKIFPRPTSGPLRPVVHGQT 61

Query: 209 VRYHTKVRAGRGFTLLKL 262
           ++Y+ KVR G+GFTL +L
Sbjct: 62  LKYNMKVRTGKGFTLEEL 79



 Score = 75.4 bits (177), Expect = 3e-14
 Identities = 36/83 (43%), Positives = 56/83 (67%), Gaps = 1/83 (1%)
 Frame = +1

Query: 256 EIRAAXLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILFP-QGKXVLKGEA 432
           E++AA +    A TIGIAVD RR+N+S+E LQ NVQR+K Y+ +L++FP + + V  G++
Sbjct: 78  ELKAAGIPKKLAPTIGIAVDHRRKNRSLEGLQTNVQRLKTYKTKLVIFPRRARKVKAGDS 137

Query: 433 NEEERKLATXLRGPLMPVQQPAP 501
             EE   AT ++G  +P+ +  P
Sbjct: 138 TPEELANATQVQGDYLPIVREKP 160


>At5g23900.1 68418.m02807 60S ribosomal protein L13 (RPL13D)
          Length = 206

 Score = 85.4 bits (202), Expect = 3e-17
 Identities = 39/78 (50%), Positives = 50/78 (64%)
 Frame = +2

Query: 29  KGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPT 208
           K NN+IP+ HF K WQ +VKTWFNQPAR+ RR+  R               LRP+V   T
Sbjct: 2   KHNNVIPSSHFRKHWQNYVKTWFNQPARKTRRRVARQKKAVKIFPRPTSGPLRPVVHGQT 61

Query: 209 VRYHTKVRAGRGFTLLKL 262
           ++Y+ KVRAG+GFTL +L
Sbjct: 62  LKYNMKVRAGKGFTLEEL 79



 Score = 72.9 bits (171), Expect = 2e-13
 Identities = 35/78 (44%), Positives = 54/78 (69%), Gaps = 1/78 (1%)
 Frame = +1

Query: 256 EIRAAXLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILFP-QGKXVLKGEA 432
           E++ A +    A TIGI+VD RR+N+S+E LQ NVQR+K Y+A+L++FP + + V  G++
Sbjct: 78  ELKVAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRSRQVKAGDS 137

Query: 433 NEEERKLATXLRGPLMPV 486
             EE   AT ++G  MP+
Sbjct: 138 TPEELANATQVQGDYMPI 155



 Score = 29.1 bits (62), Expect = 2.9
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +3

Query: 519 ITEDEKNFKAYQYLXGARSIAKLVGIRAKRLXDA 620
           +T D K FKAY  +   R+ A+  G RAKR  +A
Sbjct: 167 LTADLKAFKAYDKIRLERTNARHAGARAKRAAEA 200


>At3g48960.1 68416.m05348 60S ribosomal protein L13 (RPL13C) 60S
           ribosomal protein L13 (BBC1), Arabidopsis thaliana,
           gb:X75162
          Length = 206

 Score = 79.0 bits (186), Expect = 3e-15
 Identities = 37/78 (47%), Positives = 48/78 (61%)
 Frame = +2

Query: 29  KGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPT 208
           K NN+IPNGHF K W+ +VKT FNQPA + RR+  R               +RP+V   T
Sbjct: 2   KHNNVIPNGHFKKKWENYVKTSFNQPAMKTRRRIARQNKAVKIFPRPTAGPIRPVVHAQT 61

Query: 209 VRYHTKVRAGRGFTLLKL 262
           + Y+ KVRAG+GFTL +L
Sbjct: 62  LTYNMKVRAGKGFTLEEL 79



 Score = 68.1 bits (159), Expect = 5e-12
 Identities = 38/101 (37%), Positives = 63/101 (62%), Gaps = 1/101 (0%)
 Frame = +1

Query: 256 EIRAAXLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILFPQ-GKXVLKGEA 432
           E++AA +    A TIGI+VD  R+N+S+E  Q NVQR+K Y+A+L++FP+  + V  G++
Sbjct: 78  ELKAAGIPKKLAPTIGISVDHHRKNRSLEGFQTNVQRLKTYKAKLVIFPRCARTVKVGDS 137

Query: 433 NEEERKLATXLRGPLMPVQQPAPKSVQDLSLKMKRTSKLIN 555
            ++E   AT ++   MP+ +  P    +L +K+    KL N
Sbjct: 138 AQQELANATQVQVDHMPIVREMP--TMEL-VKLTSDMKLFN 175


>At2g02060.1 68415.m00141 calcium-dependent protein kinase-related /
           CDPK-related contains TIGRFAM TIGR01557: myb-like
           DNA-binding domain, SHAQKYF class; contains Pfam
           PF00249: Myb-like DNA-binding domain; similar to CDPK
           substrate protein 1; CSP1 (GI:6942190) [Mesembryanthemum
           crystallinum].
          Length = 626

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = -3

Query: 159 ATALAFFILFCFLRYRRAGWLNQV 88
           A  L FFI FCF  YR +G+L  V
Sbjct: 266 AVLLLFFICFCFSLYRTSGYLRIV 289


>At1g66470.1 68414.m07551 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 298

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = +1

Query: 424 GEANEEERKLATXLRGPLMPVQQPAPKSVQDLSLK--MKRTSKLINT*XELAP 576
           GE+ +  +KL++ + G   P    +PK  Q L+ K   +R S+ +    EL P
Sbjct: 177 GESTQPSKKLSSGVTGKTKPKPTTSPKDPQSLAAKNRRERISERLKILQELVP 229


>At5g65110.1 68418.m08191 acyl-CoA oxidase (ACX2) identical to
           acyl-CoA oxidase [Arabidopsis thaliana] GI:3044212
          Length = 692

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = +3

Query: 600 AKRLXDAAENPDDVTKAPTAKE 665
           AK L DA E PD VT+AP A +
Sbjct: 658 AKELVDAFELPDHVTRAPIAMQ 679


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,089,299
Number of Sequences: 28952
Number of extensions: 272252
Number of successful extensions: 613
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 609
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1467502800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)