Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30392
(812 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q6P2Q9 Cluster: Pre-mRNA-processing-splicing factor 8; ... 181 2e-44
UniRef50_Q8I1X5 Cluster: Pre-mRNA splicing factor, putative; n=1... 166 7e-40
UniRef50_A6R4K4 Cluster: Pre-mRNA processing splicing factor 8; ... 159 6e-38
UniRef50_Q53GM6 Cluster: U5 snRNP-specific protein variant; n=13... 93 1e-17
UniRef50_A4IBT3 Cluster: PRP8 protein homologue, putative; n=8; ... 73 1e-11
UniRef50_A5E0E9 Cluster: Putative uncharacterized protein; n=1; ... 57 5e-07
UniRef50_Q7QTZ9 Cluster: GLP_169_4270_455; n=1; Giardia lamblia ... 55 2e-06
UniRef50_Q9AW36 Cluster: Splicing factor Prp8; n=1; Guillardia t... 45 0.002
UniRef50_UPI0000ECA423 Cluster: UPI0000ECA423 related cluster; n... 41 0.032
UniRef50_Q9WJC8 Cluster: Nonstructural polyprotein; n=12; Venezu... 36 1.6
UniRef50_P13887 Cluster: Non-structural polyprotein (Polyprotein... 35 2.1
UniRef50_P91621 Cluster: Protein still life, isoform SIF type 1;... 34 4.9
UniRef50_P72408 Cluster: BldKC; n=5; Streptomyces|Rep: BldKC - S... 33 8.6
UniRef50_P87515 Cluster: Non-structural polyprotein (Polyprotein... 33 8.6
>UniRef50_Q6P2Q9 Cluster: Pre-mRNA-processing-splicing factor 8;
n=106; Eukaryota|Rep: Pre-mRNA-processing-splicing factor
8 - Homo sapiens (Human)
Length = 2335
Score = 181 bits (440), Expect = 2e-44
Identities = 84/85 (98%), Positives = 84/85 (98%)
Frame = +2
Query: 2 ANPALYVLRERIRKALQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFE 181
ANPALYVLRERIRK LQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFE
Sbjct: 1736 ANPALYVLRERIRKGLQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFE 1795
Query: 182 GNLTTKPINGAIFIFNPRTGQLFLK 256
GNLTTKPINGAIFIFNPRTGQLFLK
Sbjct: 1796 GNLTTKPINGAIFIFNPRTGQLFLK 1820
Score = 177 bits (430), Expect = 4e-43
Identities = 84/84 (100%), Positives = 84/84 (100%)
Frame = +1
Query: 256 IIHTSVWAGQKRLGQLAKWKTAEEVAALIRSLPVEEQPKQIIVTRKGMLDPLEVHLLDFP 435
IIHTSVWAGQKRLGQLAKWKTAEEVAALIRSLPVEEQPKQIIVTRKGMLDPLEVHLLDFP
Sbjct: 1821 IIHTSVWAGQKRLGQLAKWKTAEEVAALIRSLPVEEQPKQIIVTRKGMLDPLEVHLLDFP 1880
Query: 436 NIVIKGSELQLPFQACLKVEKFGD 507
NIVIKGSELQLPFQACLKVEKFGD
Sbjct: 1881 NIVIKGSELQLPFQACLKVEKFGD 1904
Score = 92.7 bits (220), Expect = 1e-17
Identities = 39/50 (78%), Positives = 45/50 (90%)
Frame = +2
Query: 626 VNTERTKVLLKPDKTTFTEPHHIWPTLTDDDWIKVEVQLKDLILADMERR 775
VN +R KV+LKPDKTT TEPHHIWPTLTD++WIKVEVQLKDLILAD ++
Sbjct: 1945 VNNDRAKVILKPDKTTITEPHHIWPTLTDEEWIKVEVQLKDLILADYGKK 1994
Score = 79.8 bits (188), Expect = 8e-14
Identities = 38/38 (100%), Positives = 38/38 (100%)
Frame = +3
Query: 510 ILKATEPQMVLFNLYDDWLKTISSYTAFSRLILILRAL 623
ILKATEPQMVLFNLYDDWLKTISSYTAFSRLILILRAL
Sbjct: 1906 ILKATEPQMVLFNLYDDWLKTISSYTAFSRLILILRAL 1943
Score = 33.9 bits (74), Expect = 4.9
Identities = 15/16 (93%), Positives = 15/16 (93%)
Frame = +1
Query: 763 YGKKTNVNVASLTQSE 810
YGKK NVNVASLTQSE
Sbjct: 1991 YGKKNNVNVASLTQSE 2006
>UniRef50_Q8I1X5 Cluster: Pre-mRNA splicing factor, putative; n=1;
Plasmodium falciparum 3D7|Rep: Pre-mRNA splicing factor,
putative - Plasmodium falciparum (isolate 3D7)
Length = 3136
Score = 166 bits (403), Expect = 7e-40
Identities = 75/85 (88%), Positives = 81/85 (95%)
Frame = +2
Query: 2 ANPALYVLRERIRKALQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFE 181
+NP+LYVLRERIRK LQLYSSEPTEPYL++QNY ELFS+Q IWFVDDTNVYRVTIHKTFE
Sbjct: 2433 SNPSLYVLRERIRKGLQLYSSEPTEPYLNTQNYNELFSSQTIWFVDDTNVYRVTIHKTFE 2492
Query: 182 GNLTTKPINGAIFIFNPRTGQLFLK 256
GNLTTKPINGAIFI NP+TGQLFLK
Sbjct: 2493 GNLTTKPINGAIFILNPKTGQLFLK 2517
Score = 159 bits (387), Expect = 6e-38
Identities = 103/194 (53%), Positives = 125/194 (64%), Gaps = 9/194 (4%)
Frame = +1
Query: 256 IIHTSVWAGQKRLGQLAKWKTAEEVAALIRSLPVEEQPKQIIVTRKGMLDPLEVHLLDFP 435
IIHTSVW GQKRL QLAKWKTAEEVA+LIRSLP+EEQPKQIIVTRKGMLDPLEVHLLDFP
Sbjct: 2518 IIHTSVWIGQKRLSQLAKWKTAEEVASLIRSLPIEEQPKQIIVTRKGMLDPLEVHLLDFP 2577
Query: 436 NIVIKGSELQLPFQACLKVEKFGDPF*RLLSLKWSCSTYMMTG*RLYLHILPSVGS-S*Y 612
NI+IKG+EL LPFQA LK+ K GD L LK + ++ LY L S+ S + +
Sbjct: 2578 NIIIKGTELNLPFQALLKLNKIGD-----LILKATQPQMLLF--NLYDDWLNSISSFTAF 2630
Query: 613 SVLCSEHRT-HKGPLETR-----*NHFHGTSPH--LAHFN***LDQS*GSTEGLNIS*YG 768
S L R+ H P +T+ + T PH FN + L ++ Y
Sbjct: 2631 SRLILILRSLHINPQQTKILLQPNKNIVTTQPHHIWPSFNNNQWIHLEVQLKDLILNDYS 2690
Query: 769 KKTNVNVASLTQSE 810
K+ NV++ASLTQ+E
Sbjct: 2691 KRNNVHIASLTQNE 2704
Score = 71.7 bits (168), Expect = 2e-11
Identities = 34/48 (70%), Positives = 41/48 (85%)
Frame = +3
Query: 480 LFESGKVW*PILKATEPQMVLFNLYDDWLKTISSYTAFSRLILILRAL 623
L + K+ ILKAT+PQM+LFNLYDDWL +ISS+TAFSRLILILR+L
Sbjct: 2593 LLKLNKIGDLILKATQPQMLLFNLYDDWLNSISSFTAFSRLILILRSL 2640
Score = 66.1 bits (154), Expect = 1e-09
Identities = 27/51 (52%), Positives = 39/51 (76%), Gaps = 1/51 (1%)
Frame = +2
Query: 626 VNTERTKVLLKPDKTTFT-EPHHIWPTLTDDDWIKVEVQLKDLILADMERR 775
+N ++TK+LL+P+K T +PHHIWP+ ++ WI +EVQLKDLIL D +R
Sbjct: 2642 INPQQTKILLQPNKNIVTTQPHHIWPSFNNNQWIHLEVQLKDLILNDYSKR 2692
>UniRef50_A6R4K4 Cluster: Pre-mRNA processing splicing factor 8; n=1;
Ajellomyces capsulatus NAm1|Rep: Pre-mRNA processing
splicing factor 8 - Ajellomyces capsulatus NAm1
Length = 2739
Score = 159 bits (387), Expect = 6e-38
Identities = 75/84 (89%), Positives = 79/84 (94%)
Frame = +1
Query: 256 IIHTSVWAGQKRLGQLAKWKTAEEVAALIRSLPVEEQPKQIIVTRKGMLDPLEVHLLDFP 435
IIHTSVWAGQKRLGQLAKWKTAEEVAALIRSLPVEEQPKQ+IVTRKG+LDPLEVHLLDFP
Sbjct: 2224 IIHTSVWAGQKRLGQLAKWKTAEEVAALIRSLPVEEQPKQLIVTRKGLLDPLEVHLLDFP 2283
Query: 436 NIVIKGSELQLPFQACLKVEKFGD 507
NI I+ SELQLPFQA +KVEK D
Sbjct: 2284 NISIRASELQLPFQAAMKVEKLAD 2307
Score = 155 bits (375), Expect = 2e-36
Identities = 72/85 (84%), Positives = 78/85 (91%)
Frame = +2
Query: 2 ANPALYVLRERIRKALQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFE 181
ANPALYVLRERIRK LQLY+SE + +L+SQNY ELFSN+I F+DDTNVYRVTIHKTFE
Sbjct: 2139 ANPALYVLRERIRKGLQLYASESNQEFLNSQNYSELFSNKIQLFIDDTNVYRVTIHKTFE 2198
Query: 182 GNLTTKPINGAIFIFNPRTGQLFLK 256
GNLTTKPINGAIFIFNPRTGQLFLK
Sbjct: 2199 GNLTTKPINGAIFIFNPRTGQLFLK 2223
Score = 83.4 bits (197), Expect = 6e-15
Identities = 34/50 (68%), Positives = 43/50 (86%)
Frame = +2
Query: 626 VNTERTKVLLKPDKTTFTEPHHIWPTLTDDDWIKVEVQLKDLILADMERR 775
VN E+TK+LL+PDKT T+ HHIWPTL+D+DWIKVEVQL+DLIL D ++
Sbjct: 2348 VNPEKTKILLRPDKTVITQEHHIWPTLSDEDWIKVEVQLRDLILNDYGKK 2397
Score = 77.0 bits (181), Expect = 5e-13
Identities = 36/38 (94%), Positives = 38/38 (100%)
Frame = +3
Query: 510 ILKATEPQMVLFNLYDDWLKTISSYTAFSRLILILRAL 623
IL+ATEPQMVLFNLYD+WLKTISSYTAFSRLILILRAL
Sbjct: 2309 ILRATEPQMVLFNLYDEWLKTISSYTAFSRLILILRAL 2346
>UniRef50_Q53GM6 Cluster: U5 snRNP-specific protein variant; n=13;
Eukaryota|Rep: U5 snRNP-specific protein variant - Homo
sapiens (Human)
Length = 398
Score = 92.7 bits (220), Expect = 1e-17
Identities = 39/50 (78%), Positives = 45/50 (90%)
Frame = +2
Query: 626 VNTERTKVLLKPDKTTFTEPHHIWPTLTDDDWIKVEVQLKDLILADMERR 775
VN +R KV+LKPDKTT TEPHHIWPTLTD++WIKVEVQLKDLILAD ++
Sbjct: 8 VNNDRAKVILKPDKTTITEPHHIWPTLTDEEWIKVEVQLKDLILADYGKK 57
Score = 33.9 bits (74), Expect = 4.9
Identities = 15/16 (93%), Positives = 15/16 (93%)
Frame = +1
Query: 763 YGKKTNVNVASLTQSE 810
YGKK NVNVASLTQSE
Sbjct: 54 YGKKNNVNVASLTQSE 69
>UniRef50_A4IBT3 Cluster: PRP8 protein homologue, putative; n=8;
Trypanosomatidae|Rep: PRP8 protein homologue, putative -
Leishmania infantum
Length = 2427
Score = 72.5 bits (170), Expect = 1e-11
Identities = 36/79 (45%), Positives = 53/79 (67%), Gaps = 1/79 (1%)
Frame = +1
Query: 256 IIHTSVWAGQKRLGQLAKWKTAEEVAALIRSLPVEEQPKQIIVTRKGMLDPL-EVHLLDF 432
++H SV++GQKR +LA+ K AEE+A+ +RS P E+P +IIVTR L + +LD+
Sbjct: 1896 VVHRSVFSGQKRRSKLAREKAAEEIASWLRSCPPSERPSKIIVTRSRFRQTLHNMLVLDY 1955
Query: 433 PNIVIKGSELQLPFQACLK 489
PNI+I S+L LP L+
Sbjct: 1956 PNIIIGQSDLNLPLPMVLR 1974
Score = 63.7 bits (148), Expect = 5e-09
Identities = 34/82 (41%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Frame = +2
Query: 5 NPALYVLRERIRKALQLYSSEPTEPYLSSQNYGELFSNQI-IWFVDDTNVYRVTIHKTFE 181
N L LR+R+++ L L+SS PTE LS N ELFS+ + W VDD+ Y + T +
Sbjct: 1811 NITLNTLRDRMKRDLGLFSSAPTEASLSDTNIAELFSSGMRTWIVDDSATYVTSEQPTPD 1870
Query: 182 GNLTTKPINGAIFIFNPRTGQL 247
G K NGA+ +F P +G L
Sbjct: 1871 GGKKFKSENGAVLVFEPVSGSL 1892
Score = 45.6 bits (103), Expect = 0.002
Identities = 19/53 (35%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Frame = +2
Query: 620 FAVNTERTKVLLKPDKTTFTEPHHIWPT-LTDDDWIKVEVQLKDLILADMERR 775
+ +N +RT+ +L PD H WPT T +W +V ++L+++I+AD RR
Sbjct: 2021 YHINLQRTRQILVPDLHVEVSASHFWPTYATRQEWEQVSIRLQEMIIADAARR 2073
>UniRef50_A5E0E9 Cluster: Putative uncharacterized protein; n=1;
Lodderomyces elongisporus NRRL YB-4239|Rep: Putative
uncharacterized protein - Lodderomyces elongisporus
(Yeast) (Saccharomyces elongisporus)
Length = 150
Score = 57.2 bits (132), Expect = 5e-07
Identities = 28/71 (39%), Positives = 47/71 (66%)
Frame = -2
Query: 229 IEYKNGSIDGFSCQVSFKGFVNCYTIHIRVINEPNDLIREQFSIVLTGEVRFSRF*RIQL 50
I+ K+ +I F CQ++F+ F+N T+HI VIN+ ++ EQF I++ + FSR +QL
Sbjct: 80 IKDKHTTIYRFGCQITFQCFMNSDTVHICVINKQLRIVVEQFGIIIRIQESFSRLCVVQL 139
Query: 49 QCFTYTFSEHI 17
Q F+ T S+++
Sbjct: 140 QPFSNTLSQNV 150
Score = 53.6 bits (123), Expect = 6e-06
Identities = 27/68 (39%), Positives = 36/68 (52%)
Frame = -3
Query: 465 LQFGTLDYNVRKVE*MDLKWIQHSFSGXXXXXXXXXXRQ*SN*GSYFFCSLPFSKLSKTF 286
+QF T D +R+++ + KWI HSFS Q S FFCSLPF KL+++
Sbjct: 1 MQFRTTDGYIREIQHVHFKWIHHSFSSNNQLFRLFFTGQRLEQCSDFFCSLPFGKLTQSL 60
Query: 285 LPCPYTSV 262
L PY V
Sbjct: 61 LSSPYRGV 68
>UniRef50_Q7QTZ9 Cluster: GLP_169_4270_455; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_169_4270_455 - Giardia lamblia ATCC
50803
Length = 1271
Score = 54.8 bits (126), Expect = 2e-06
Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Frame = +1
Query: 256 IIHTSVWAGQKRLGQLAKWKTAEEVAALIRSLPVEEQPKQIIVTRKGMLDPLEVHLLDF- 432
++H +AGQ R L++W+TA+ + I SLP +P ++V + +DP+ L
Sbjct: 698 VVHADTYAGQSRRASLSRWRTADLLTGYISSLPQALRPTTVVVCSRQSIDPIRTLLSVLN 757
Query: 433 PNIVIKGSELQLPFQ 477
P IV++G+ L FQ
Sbjct: 758 PPIVVRGTSLHWQFQ 772
Score = 45.2 bits (102), Expect = 0.002
Identities = 29/85 (34%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Frame = +2
Query: 2 ANPALYVLRERIRKALQLYSSEPTE-PYLSSQNYGELFSNQIIWFVDDTNVYRVTIHKTF 178
+N + +L +RIR L L SS + ++ + G+LF+ ++I VDD+ Y +
Sbjct: 613 SNTMMNMLADRIRTQLGLSSSSVHKLTDITPSSIGDLFTGKVI-IVDDSLAYNFRMLNRD 671
Query: 179 EGNLTTKPINGAIFIFNPRTGQLFL 253
+ + ING I IFNP+TG+L L
Sbjct: 672 DTRASRAIINGFISIFNPQTGRLVL 696
>UniRef50_Q9AW36 Cluster: Splicing factor Prp8; n=1; Guillardia
theta|Rep: Splicing factor Prp8 - Guillardia theta
(Cryptomonas phi)
Length = 2057
Score = 45.2 bits (102), Expect = 0.002
Identities = 26/82 (31%), Positives = 42/82 (51%)
Frame = +2
Query: 14 LYVLRERIRKALQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFEGNLT 193
L +LR RIRK+LQ+Y E S N + F + + VDD+ + + + N
Sbjct: 1560 LNILRSRIRKSLQIYQKNNIESNESILNIDDFFKKKCL-IVDDSCLSNHLELQNLQKNKV 1618
Query: 194 TKPINGAIFIFNPRTGQLFLKS 259
+G +FIFNP G +++K+
Sbjct: 1619 INYHSGFLFIFNPINGLIYIKN 1640
Score = 41.9 bits (94), Expect = 0.018
Identities = 21/83 (25%), Positives = 44/83 (53%)
Frame = +1
Query: 259 IHTSVWAGQKRLGQLAKWKTAEEVAALIRSLPVEEQPKQIIVTRKGMLDPLEVHLLDFPN 438
++ S + +K +K E+ +++ P E P II +KG+ + L + L+++P+
Sbjct: 1641 LNCSKFNNKKNFKDFSKIFLGNELVNFLKTCPKFELPLNIITLKKGLKEFLHLKLIEYPD 1700
Query: 439 IVIKGSELQLPFQACLKVEKFGD 507
I + +E+ + F+ LK+ F D
Sbjct: 1701 INVYQAEIDIMFRNLLKLNIFKD 1723
Score = 39.9 bits (89), Expect = 0.075
Identities = 16/29 (55%), Positives = 24/29 (82%)
Frame = +3
Query: 540 LFNLYDDWLKTISSYTAFSRLILILRALQ 626
+ LYD+WL +IS TAF+RLILIL++++
Sbjct: 1735 IIELYDNWLDSISPITAFTRLILILKSIE 1763
>UniRef50_UPI0000ECA423 Cluster: UPI0000ECA423 related cluster; n=1;
Gallus gallus|Rep: UPI0000ECA423 UniRef100 entry -
Gallus gallus
Length = 82
Score = 41.1 bits (92), Expect = 0.032
Identities = 16/24 (66%), Positives = 19/24 (79%)
Frame = -3
Query: 507 VTKLFHFQTSLERQLQFGTLDYNV 436
+TKL HFQT LERQLQ G D+N+
Sbjct: 58 ITKLLHFQTGLERQLQLGAFDHNI 81
>UniRef50_Q9WJC8 Cluster: Nonstructural polyprotein; n=12; Venezuelan
equine encephalitis virus|Rep: Nonstructural polyprotein
- Venezuelan equine encephalitis virus
Length = 2455
Score = 35.5 bits (78), Expect = 1.6
Identities = 18/49 (36%), Positives = 25/49 (51%)
Frame = +2
Query: 581 IYCLQSAHPDTPCFAVNTERTKVLLKPDKTTFTEPHHIWPTLTDDDWIK 727
+Y ++ + P +A N+E VLL T TE +W TL D WIK
Sbjct: 924 VYAVRYKVNENPLYAANSEHVNVLL-----TRTEDRIVWKTLAGDPWIK 967
>UniRef50_P13887 Cluster: Non-structural polyprotein (Polyprotein
nsP1234) (P1234) [Contains: P123; mRNA-capping enzyme
nsP1 (EC 2.1.1.-) (EC 2.7.7.-) (Non- structural protein
1); Protease/triphosphatase/NTPase/helicase nsP2 (EC
3.4.22.-) (EC 3.1.3.33) (EC 3.6.1.15) (EC 3.6.1.-)
(Non-structural protein 2) (nsP2); Non-structural protein
3 (nsP3); RNA-directed RNA polymerase nsP4 (EC 2.7.7.48)
(Non-structural protein 4) (nsP4)]; n=181; root|Rep:
Non-structural polyprotein (Polyprotein nsP1234) (P1234)
[Contains: P123; mRNA-capping enzyme nsP1 (EC 2.1.1.-)
(EC 2.7.7.-) (Non- structural protein 1);
Protease/triphosphatase/NTPase/helicase nsP2 (EC
3.4.22.-) (EC 3.1.3.33) (EC 3.6.1.15) (EC 3.6.1.-)
(Non-structural protein 2) (nsP2); Non-structural protein
3 (nsP3); RNA-directed RNA polymerase nsP4 (EC 2.7.7.48)
(Non-structural protein 4) (nsP4)] - Ross river virus
(strain NB5092) (RRV)
Length = 2479
Score = 35.1 bits (77), Expect = 2.1
Identities = 18/50 (36%), Positives = 27/50 (54%)
Frame = +2
Query: 581 IYCLQSAHPDTPCFAVNTERTKVLLKPDKTTFTEPHHIWPTLTDDDWIKV 730
+Y ++ + P +A ++E VLL T TE +W TL+ D WIKV
Sbjct: 923 VYAVRQKVNENPLYAPSSEHVNVLL-----TRTENRLVWKTLSGDPWIKV 967
>UniRef50_P91621 Cluster: Protein still life, isoform SIF type 1; n=7;
Endopterygota|Rep: Protein still life, isoform SIF type 1
- Drosophila melanogaster (Fruit fly)
Length = 2072
Score = 33.9 bits (74), Expect = 4.9
Identities = 18/72 (25%), Positives = 34/72 (47%)
Frame = +3
Query: 3 LILPCMCSENVYVKHCNCILQNLLNLTSPVRTMENCSLIKSFGSLMTRMCIV*QFTKPLK 182
+++ + +E YVKH N +L++ L + N + FG++ + QF + L+
Sbjct: 1440 VVMELVDTERTYVKHLNNLLEHYLEPMKRETFLSNAEINALFGNIHEIVTFQRQFLQNLE 1499
Query: 183 ET*QLNPSMEPF 218
E+ L P F
Sbjct: 1500 ESLDLEPDFNKF 1511
>UniRef50_P72408 Cluster: BldKC; n=5; Streptomyces|Rep: BldKC -
Streptomyces coelicolor
Length = 323
Score = 33.1 bits (72), Expect = 8.6
Identities = 13/39 (33%), Positives = 26/39 (66%)
Frame = -1
Query: 548 VEQDHLRLSSLQNGSPNFSTFKQAWNGSCSSEPLITMLG 432
++++H+R + + S N++ F+ AW GS P++T+LG
Sbjct: 217 LQEEHVRAARAKGMSSNYTFFRYAWRGSL--VPIVTILG 253
>UniRef50_P87515 Cluster: Non-structural polyprotein (Polyprotein
nsP1234) (P1234) [Contains: P123; P123'; mRNA-capping
enzyme nsP1 (EC 2.1.1.-) (EC 2.7.7.-) (Non- structural
protein 1); Protease/triphosphatase/NTPase/helicase nsP2
(EC 3.4.22.-) (EC 3.1.3.33) (EC 3.6.1.15) (EC 3.6.1.-)
(Non-structural protein 2) (nsP2); Non-structural protein
3 (nsP3); Non-structural protein 3' (nsP3'); RNA-directed
RNA polymerase nsP4 (EC 2.7.7.48) (Non-structural protein
4) (nsP4)]; n=13; Alphavirus|Rep: Non-structural
polyprotein (Polyprotein nsP1234) (P1234) [Contains:
P123; P123'; mRNA-capping enzyme nsP1 (EC 2.1.1.-) (EC
2.7.7.-) (Non- structural protein 1);
Protease/triphosphatase/NTPase/helicase nsP2 (EC
3.4.22.-) (EC 3.1.3.33) (EC 3.6.1.15) (EC 3.6.1.-)
(Non-structural protein 2) (nsP2); Non-structural protein
3 (nsP3); Non-structural protein 3' (nsP3'); RNA-directed
RNA polymerase nsP4 (EC 2.7.7.48) (Non-structural protein
4) (nsP4)] - Barmah forest virus (BFV)
Length = 2410
Score = 33.1 bits (72), Expect = 8.6
Identities = 17/49 (34%), Positives = 26/49 (53%)
Frame = +2
Query: 581 IYCLQSAHPDTPCFAVNTERTKVLLKPDKTTFTEPHHIWPTLTDDDWIK 727
+Y +++ + P +A +E VLL T TE +W TL+ D WIK
Sbjct: 923 VYAVRTKVNENPLYAQTSEHVNVLL-----TRTENKLVWKTLSTDPWIK 966
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 826,114,171
Number of Sequences: 1657284
Number of extensions: 16739825
Number of successful extensions: 40500
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 39019
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40487
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 70377768045
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -