Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30392
(812 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 161 8e-41
SPBC146.12 |coq6||monooxygenase Coq6|Schizosaccharomyces pombe|c... 30 0.45
SPAC25B8.02 |||histone deacetylase complex subunit Sds3 |Schizos... 26 5.5
SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|ch... 26 7.3
SPBC29B5.04c |||conserved fungal protein|Schizosaccharomyces pom... 26 7.3
SPAC17A5.11 |rec12|spo11|endonuclease Rec12|Schizosaccharomyces ... 25 9.7
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 25 9.7
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 161 bits (392), Expect = 8e-41
Identities = 77/85 (90%), Positives = 78/85 (91%)
Frame = +2
Query: 2 ANPALYVLRERIRKALQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFE 181
ANPALYVLRERIRK LQLY+SEP E YLSS NY ELFSNQI FVDDTNVYRVTIHKTFE
Sbjct: 1760 ANPALYVLRERIRKGLQLYASEPQEQYLSSSNYAELFSNQIQLFVDDTNVYRVTIHKTFE 1819
Query: 182 GNLTTKPINGAIFIFNPRTGQLFLK 256
GNLTTKPINGAIFIFNPRTGQLFLK
Sbjct: 1820 GNLTTKPINGAIFIFNPRTGQLFLK 1844
Score = 161 bits (392), Expect = 8e-41
Identities = 75/84 (89%), Positives = 80/84 (95%)
Frame = +1
Query: 256 IIHTSVWAGQKRLGQLAKWKTAEEVAALIRSLPVEEQPKQIIVTRKGMLDPLEVHLLDFP 435
+IHTSVWAGQKRLGQLAKWKTAEEVAALIRSLPVEEQP+QIIVTRKGMLDPLEVHLLDFP
Sbjct: 1845 VIHTSVWAGQKRLGQLAKWKTAEEVAALIRSLPVEEQPRQIIVTRKGMLDPLEVHLLDFP 1904
Query: 436 NIVIKGSELQLPFQACLKVEKFGD 507
NI IKGSELQLPFQA +K++K D
Sbjct: 1905 NITIKGSELQLPFQAIIKLDKIND 1928
Score = 74.9 bits (176), Expect = 1e-14
Identities = 34/38 (89%), Positives = 38/38 (100%)
Frame = +3
Query: 510 ILKATEPQMVLFNLYDDWLKTISSYTAFSRLILILRAL 623
IL+ATEPQMVLFNLYDDWL+++SSYTAFSRLILILRAL
Sbjct: 1930 ILRATEPQMVLFNLYDDWLQSVSSYTAFSRLILILRAL 1967
Score = 68.1 bits (159), Expect = 1e-12
Identities = 26/50 (52%), Positives = 39/50 (78%)
Frame = +2
Query: 626 VNTERTKVLLKPDKTTFTEPHHIWPTLTDDDWIKVEVQLKDLILADMERR 775
VNTE+TK++L+PDK+ T+ +H+WP L D W+ VE +L+DLILAD ++
Sbjct: 1969 VNTEKTKLILRPDKSIITKENHVWPNLDDQQWLDVEPKLRDLILADYAKK 2018
Score = 29.1 bits (62), Expect = 0.79
Identities = 12/16 (75%), Positives = 13/16 (81%)
Frame = +1
Query: 763 YGKKTNVNVASLTQSE 810
Y KK N+NVASLT SE
Sbjct: 2015 YAKKNNINVASLTNSE 2030
>SPBC146.12 |coq6||monooxygenase Coq6|Schizosaccharomyces pombe|chr
2|||Manual
Length = 466
Score = 29.9 bits (64), Expect = 0.45
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = +2
Query: 146 NVYRVTIHKTFEGNLTTKPINGA 214
N+YR IH T G LTTK + GA
Sbjct: 176 NIYRTHIHTTTHGELTTKLLIGA 198
>SPAC25B8.02 |||histone deacetylase complex subunit Sds3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 267
Score = 26.2 bits (55), Expect = 5.5
Identities = 19/58 (32%), Positives = 27/58 (46%)
Frame = +3
Query: 531 QMVLFNLYDDWLKTISSYTAFSRLILILRALQ*TQNAQRSS*NPIKPLSRNLTTFGPL 704
Q+ N +DD+L + TA Q +NA R+S N +KP S + F PL
Sbjct: 161 QLPSLNFFDDYLLFPTDETAVIP--------QSVKNAVRNSVNSVKPTSAEASLFSPL 210
>SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 979
Score = 25.8 bits (54), Expect = 7.3
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +1
Query: 268 SVWAGQKRLGQLAKWKTAEEVAALIRS 348
S WA +R+GQ ++ AE+V +RS
Sbjct: 290 SKWANDQRIGQEELYEAAEKVVLELRS 316
>SPBC29B5.04c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 605
Score = 25.8 bits (54), Expect = 7.3
Identities = 12/43 (27%), Positives = 24/43 (55%)
Frame = +3
Query: 30 NVYVKHCNCILQNLLNLTSPVRTMENCSLIKSFGSLMTRMCIV 158
++Y++H N +LQN++ P + SL+ + SL R ++
Sbjct: 372 SIYLRHFNGVLQNII---EPAAARKRSSLLTAIRSLGDRKIVL 411
>SPAC17A5.11 |rec12|spo11|endonuclease Rec12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 345
Score = 25.4 bits (53), Expect = 9.7
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +1
Query: 304 AKWKTAEEVAALIRSLPVEEQPKQIIVTRKGMLD 405
AKW E A+ ++L E IIVT KG D
Sbjct: 172 AKWVLVIEKEAVFQTLTEEALADTIIVTAKGFPD 205
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 25.4 bits (53), Expect = 9.7
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = -2
Query: 211 SIDGFSCQVSFKGFVNCYTIHIRVINEPNDLIREQFSIVL-TGEVRF 74
S+DG S + F+G +N + I + D I SI+L G ++F
Sbjct: 267 SVDGISDEKDFQGTMNAMKV-IGITEPEQDEIFRMLSIILWLGNIQF 312
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,533,855
Number of Sequences: 5004
Number of extensions: 75522
Number of successful extensions: 188
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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