Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30392
(812 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0474 - 3362734-3362827,3363179-3363366,3363458-3363700,336... 179 3e-45
05_01_0460 - 3644229-3644420,3644623-3644865,3644959-3645237,364... 179 3e-45
02_05_0397 + 28641033-28641231,28641385-28641485,28642012-286420... 33 0.36
09_06_0320 - 22297579-22297760,22298433-22299358,22299422-222997... 30 2.5
05_04_0268 - 19574540-19574582,19574664-19574755,19574843-195749... 28 7.7
01_07_0084 + 40976976-40977164,40978174-40978201,40978445-409785... 28 7.7
>06_01_0474 - 3362734-3362827,3363179-3363366,3363458-3363700,
3363820-3364098,3364189-3364386,3364475-3365110,
3365209-3365463,3365579-3365685,3365770-3369566,
3369677-3370166,3370918-3371308,3371481-3371573,
3371687-3371810,3372544-3372791
Length = 2380
Score = 179 bits (435), Expect = 3e-45
Identities = 82/85 (96%), Positives = 84/85 (98%)
Frame = +2
Query: 2 ANPALYVLRERIRKALQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFE 181
+NPALYVLRERIRK LQLYSSEPTEPYLSSQNYGE+FSNQIIWFVDDTNVYRVTIHKTFE
Sbjct: 1751 SNPALYVLRERIRKGLQLYSSEPTEPYLSSQNYGEIFSNQIIWFVDDTNVYRVTIHKTFE 1810
Query: 182 GNLTTKPINGAIFIFNPRTGQLFLK 256
GNLTTKPINGAIFIFNPRTGQLFLK
Sbjct: 1811 GNLTTKPINGAIFIFNPRTGQLFLK 1835
Score = 176 bits (428), Expect = 2e-44
Identities = 112/195 (57%), Positives = 129/195 (66%), Gaps = 10/195 (5%)
Frame = +1
Query: 256 IIHTSVWAGQKRLGQLAKWKTAEEVAALIRSLPVEEQPKQIIVTRKGMLDPLEVHLLDFP 435
+IHTSVWAGQKRLGQLAKWKTAEEVAAL+RSLPVEEQPKQIIVTRKGMLDPLEVHLLDFP
Sbjct: 1836 VIHTSVWAGQKRLGQLAKWKTAEEVAALVRSLPVEEQPKQIIVTRKGMLDPLEVHLLDFP 1895
Query: 436 NIVIKGSELQLPFQACLKVEKFGDPF*RLLSLKWSCSTYMMTG*RLYLHILPSVGS-S*Y 612
NIVIKGSELQLPFQACLK+EKFGD L LK + M +Y L S+ S + +
Sbjct: 1896 NIVIKGSELQLPFQACLKIEKFGD-----LILK--ATEPQMVLYNIYDDWLKSISSFTAF 1948
Query: 613 S----VLCSEH-RTHKGPLETR*NHFHGTSPHLAHFN***LDQS*GSTE----GLNIS*Y 765
S +L + H K + + + T PH H D+ E L +S Y
Sbjct: 1949 SRIVLILRALHVNNEKAKMLLKPDKTIVTEPH--HIWPTLTDEQWLKVECALRDLILSDY 2006
Query: 766 GKKTNVNVASLTQSE 810
KK NVN ++LTQSE
Sbjct: 2007 AKKNNVNTSALTQSE 2021
Score = 81.4 bits (192), Expect = 8e-16
Identities = 33/50 (66%), Positives = 41/50 (82%)
Frame = +2
Query: 626 VNTERTKVLLKPDKTTFTEPHHIWPTLTDDDWIKVEVQLKDLILADMERR 775
VN E+ K+LLKPDKT TEPHHIWPTLTD+ W+KVE L+DLIL+D ++
Sbjct: 1960 VNNEKAKMLLKPDKTIVTEPHHIWPTLTDEQWLKVECALRDLILSDYAKK 2009
Score = 73.3 bits (172), Expect = 2e-13
Identities = 32/38 (84%), Positives = 38/38 (100%)
Frame = +3
Query: 510 ILKATEPQMVLFNLYDDWLKTISSYTAFSRLILILRAL 623
ILKATEPQMVL+N+YDDWLK+ISS+TAFSR++LILRAL
Sbjct: 1921 ILKATEPQMVLYNIYDDWLKSISSFTAFSRIVLILRAL 1958
>05_01_0460 - 3644229-3644420,3644623-3644865,3644959-3645237,
3645328-3645525,3645614-3646249,3646352-3646606,
3646718-3646824,3646909-3650705,3650816-3651305,
3652043-3652433,3652621-3652713,3652818-3652941,
3653871-3654118
Length = 2350
Score = 179 bits (435), Expect = 3e-45
Identities = 82/85 (96%), Positives = 84/85 (98%)
Frame = +2
Query: 2 ANPALYVLRERIRKALQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFE 181
+NPALYVLRERIRK LQLYSSEPTEPYLSSQNYGE+FSNQIIWFVDDTNVYRVTIHKTFE
Sbjct: 1751 SNPALYVLRERIRKGLQLYSSEPTEPYLSSQNYGEIFSNQIIWFVDDTNVYRVTIHKTFE 1810
Query: 182 GNLTTKPINGAIFIFNPRTGQLFLK 256
GNLTTKPINGAIFIFNPRTGQLFLK
Sbjct: 1811 GNLTTKPINGAIFIFNPRTGQLFLK 1835
Score = 176 bits (428), Expect = 2e-44
Identities = 112/195 (57%), Positives = 129/195 (66%), Gaps = 10/195 (5%)
Frame = +1
Query: 256 IIHTSVWAGQKRLGQLAKWKTAEEVAALIRSLPVEEQPKQIIVTRKGMLDPLEVHLLDFP 435
+IHTSVWAGQKRLGQLAKWKTAEEVAAL+RSLPVEEQPKQIIVTRKGMLDPLEVHLLDFP
Sbjct: 1836 VIHTSVWAGQKRLGQLAKWKTAEEVAALVRSLPVEEQPKQIIVTRKGMLDPLEVHLLDFP 1895
Query: 436 NIVIKGSELQLPFQACLKVEKFGDPF*RLLSLKWSCSTYMMTG*RLYLHILPSVGS-S*Y 612
NIVIKGSELQLPFQACLK+EKFGD L LK + M +Y L S+ S + +
Sbjct: 1896 NIVIKGSELQLPFQACLKIEKFGD-----LILK--ATEPQMVLYNIYDDWLKSISSFTAF 1948
Query: 613 S----VLCSEH-RTHKGPLETR*NHFHGTSPHLAHFN***LDQS*GSTE----GLNIS*Y 765
S +L + H K + + + T PH H D+ E L +S Y
Sbjct: 1949 SRIVLILRALHVNNEKAKMLLKPDKTIVTEPH--HIWPTLTDEQWLKVECALRDLILSDY 2006
Query: 766 GKKTNVNVASLTQSE 810
KK NVN ++LTQSE
Sbjct: 2007 AKKNNVNTSALTQSE 2021
Score = 81.4 bits (192), Expect = 8e-16
Identities = 33/50 (66%), Positives = 41/50 (82%)
Frame = +2
Query: 626 VNTERTKVLLKPDKTTFTEPHHIWPTLTDDDWIKVEVQLKDLILADMERR 775
VN E+ K+LLKPDKT TEPHHIWPTLTD+ W+KVE L+DLIL+D ++
Sbjct: 1960 VNNEKAKMLLKPDKTIVTEPHHIWPTLTDEQWLKVECALRDLILSDYAKK 2009
Score = 73.3 bits (172), Expect = 2e-13
Identities = 32/38 (84%), Positives = 38/38 (100%)
Frame = +3
Query: 510 ILKATEPQMVLFNLYDDWLKTISSYTAFSRLILILRAL 623
ILKATEPQMVL+N+YDDWLK+ISS+TAFSR++LILRAL
Sbjct: 1921 ILKATEPQMVLYNIYDDWLKSISSFTAFSRIVLILRAL 1958
>02_05_0397 +
28641033-28641231,28641385-28641485,28642012-28642068,
28642087-28642295,28642378-28642924
Length = 370
Score = 32.7 bits (71), Expect = 0.36
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +2
Query: 68 PTEPYLSSQNYGELFS-NQIIWFVDDTNVYRVTIHKTFEGNLTTKPI 205
P +P L + Y L++ II+++DDT + V H G+ +KP+
Sbjct: 169 PFDPTLEAHRYSVLWAPTHIIFYIDDTPIREVIRHPGMGGDFPSKPM 215
>09_06_0320 -
22297579-22297760,22298433-22299358,22299422-22299747,
22300591-22300660,22301632-22301726,22301917-22302048,
22302154-22302222,22302953-22303051,22303169-22303253,
22303353-22303453,22303660-22303728,22303861-22303901,
22304085-22304303,22304444-22304470,22304562-22304660,
22304898-22305106,22305382-22305485,22305753-22305894,
22305991-22306289,22306508-22306903
Length = 1229
Score = 29.9 bits (64), Expect = 2.5
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -1
Query: 350 SDLIKAATSSAVFHLASCPRRFCPAHTLVW 261
SD IK++T S V HL P FC +L++
Sbjct: 249 SDAIKSSTGSIVLHLGKLPIGFCKHRSLLF 278
>05_04_0268 -
19574540-19574582,19574664-19574755,19574843-19574920,
19575095-19575232,19575478-19575606,19575889-19576018,
19576171-19576348,19576715-19576853,19577031-19577120,
19577260-19577421,19577556-19577720,19577909-19578046,
19578657-19578836,19579129-19579257,19579442-19579677,
19579795-19579957,19580030-19580070,19580162-19580489,
19581416-19581553,19581670-19581873
Length = 966
Score = 28.3 bits (60), Expect = 7.7
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = +2
Query: 158 VTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKSSTLVYGQGRNVL 295
V + GN+ G +F NP TG+ L LV QG +V+
Sbjct: 330 VNVQTMVFGNMGNTSGTGVLFTRNPSTGEKKLYGEFLVNAQGEDVV 375
>01_07_0084 +
40976976-40977164,40978174-40978201,40978445-40978575,
40978941-40979434,40979516-40979609,40979686-40979779,
40980342-40980444,40980550-40980601,40980716-40980756,
40980881-40980960,40981490-40981936,40982378-40982554,
40983205-40983803,40983886-40985040
Length = 1227
Score = 28.3 bits (60), Expect = 7.7
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = +1
Query: 352 PVEEQPKQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQLP--FQAC 483
PV+ + ++ L+PLE + P++V+ LQLP Q+C
Sbjct: 160 PVDIEAHAQVIEPLRTLEPLEAQQISLPHLVVPQISLQLPVVLQSC 205
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,987,633
Number of Sequences: 37544
Number of extensions: 454175
Number of successful extensions: 955
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 927
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 955
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2221181676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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