Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30392
(812 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_40492| Best HMM Match : PROCN (HMM E-Value=0) 114 7e-26
SB_31434| Best HMM Match : No HMM Matches (HMM E-Value=.) 80 2e-15
SB_39036| Best HMM Match : HSP9_HSP12 (HMM E-Value=6.2) 30 1.9
SB_49700| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.9
SB_36687| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.9
SB_20145| Best HMM Match : WD40 (HMM E-Value=2.4e-09) 28 7.8
SB_17203| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.8
SB_15833| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.8
>SB_40492| Best HMM Match : PROCN (HMM E-Value=0)
Length = 1784
Score = 114 bits (275), Expect = 7e-26
Identities = 55/56 (98%), Positives = 55/56 (98%)
Frame = +1
Query: 256 IIHTSVWAGQKRLGQLAKWKTAEEVAALIRSLPVEEQPKQIIVTRKGMLDPLEVHL 423
IIHTSVWAGQKRLGQLAKWKTAEEVAALIRSLPVEEQPKQIIVTRKGMLDPLEV L
Sbjct: 1712 IIHTSVWAGQKRLGQLAKWKTAEEVAALIRSLPVEEQPKQIIVTRKGMLDPLEVSL 1767
Score = 63.3 bits (147), Expect = 2e-10
Identities = 28/28 (100%), Positives = 28/28 (100%)
Frame = +2
Query: 173 TFEGNLTTKPINGAIFIFNPRTGQLFLK 256
TFEGNLTTKPINGAIFIFNPRTGQLFLK
Sbjct: 1684 TFEGNLTTKPINGAIFIFNPRTGQLFLK 1711
>SB_31434| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 47
Score = 80.2 bits (189), Expect = 2e-15
Identities = 41/47 (87%), Positives = 42/47 (89%)
Frame = +3
Query: 510 ILKATEPQMVLFNLYDDWLKTISSYTAFSRLILILRALQ*TQNAQRS 650
ILKATEPQMVLFNLYDDWLKTISSYTAFSRLILILRAL NA R+
Sbjct: 2 ILKATEPQMVLFNLYDDWLKTISSYTAFSRLILILRALH--VNADRT 46
>SB_39036| Best HMM Match : HSP9_HSP12 (HMM E-Value=6.2)
Length = 513
Score = 30.3 bits (65), Expect = 1.9
Identities = 20/77 (25%), Positives = 31/77 (40%), Gaps = 4/77 (5%)
Frame = +2
Query: 560 LAKDYIFIYCLQSAHPDTPCFAVNTERTKVLLKPDKTTFTE-PHHIWPTLTD---DDWIK 727
+++DY Y L + P PC E+ + LK T E P TD DW +
Sbjct: 164 ISRDYPCAYALDTDQPSDPCQRTAAEKNPIPLKETPTPALESAPAAMPDTTDTAWSDWNR 223
Query: 728 VEVQLKDLILADMERRP 778
+ L+ + + RP
Sbjct: 224 IRFSLRSGYFSLRDWRP 240
>SB_49700| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 7645
Score = 28.7 bits (61), Expect = 5.9
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +2
Query: 632 TERTKVLLK-PDKTTFTEPHHIWPTLTDDD 718
TE+ +V+L PD T TEP T+ DDD
Sbjct: 1043 TEKLQVILSSPDATVITEPDTATVTILDDD 1072
>SB_36687| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1115
Score = 28.7 bits (61), Expect = 5.9
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = -1
Query: 545 EQDHLRLSSLQNGSPNFSTFKQAWNGSCSSEPLITMLGKSSKW 417
E+DH R+ S+Q G F + NG E LI G W
Sbjct: 571 EEDHTRVISMQKGGNMKEVFARFCNGLNKVESLIKSKGYEFMW 613
Score = 28.3 bits (60), Expect = 7.8
Identities = 14/43 (32%), Positives = 19/43 (44%)
Frame = -1
Query: 545 EQDHLRLSSLQNGSPNFSTFKQAWNGSCSSEPLITMLGKSSKW 417
E+DH R+ S+Q G F + NG E I G+ W
Sbjct: 202 EEDHTRVISMQKGGNMKEVFTRFCNGLNKVEKAIKSKGREFMW 244
Score = 28.3 bits (60), Expect = 7.8
Identities = 14/43 (32%), Positives = 19/43 (44%)
Frame = -1
Query: 545 EQDHLRLSSLQNGSPNFSTFKQAWNGSCSSEPLITMLGKSSKW 417
E+DH R+ S+Q G F + NG E + GK W
Sbjct: 968 EEDHTRVISMQQGGNMREVFHRFCNGLKKIEDAMKAKGKEFMW 1010
>SB_20145| Best HMM Match : WD40 (HMM E-Value=2.4e-09)
Length = 682
Score = 28.3 bits (60), Expect = 7.8
Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Frame = +2
Query: 602 HPDTPCFAVNTER---TKVLLKPDKTTFTEPHHIWPTLTDDDWIKVEVQLKDLILADMER 772
+PD P V R + + P+ T+P I P L D+D I + V +D +
Sbjct: 566 NPDHPILIVGDSRGYVNSLKVSPNLRKATQPKEIIPVLVDEDSIFIPVPQQDTQQQRKHQ 625
Query: 773 RPM 781
+P+
Sbjct: 626 QPL 628
>SB_17203| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2672
Score = 28.3 bits (60), Expect = 7.8
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = -1
Query: 545 EQDHLRLSSLQNGSPNFSTFKQAWNGSCSSEPLITMLGKSSKW 417
E+DH R+ S++ G + F + NG E LI G W
Sbjct: 2523 EEDHTRVISMEKGGDMRAVFTRFCNGLNKVESLIKEAGYEFMW 2565
>SB_15833| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 775
Score = 28.3 bits (60), Expect = 7.8
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = -1
Query: 545 EQDHLRLSSLQNGSPNFSTFKQAWNGSCSSEPLITMLGKSSKW 417
E+DH R+ S+Q G S F + G E LI G W
Sbjct: 263 EEDHTRVISMQQGGDMRSVFDRFCRGLNQVEGLIKKKGHEFMW 305
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,951,688
Number of Sequences: 59808
Number of extensions: 542210
Number of successful extensions: 1246
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1246
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2263654701
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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