Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30392
(812 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L14433-3|AAA27977.1| 2329|Caenorhabditis elegans Yeast prp (spli... 178 4e-45
Z93395-6|CAB07708.1| 3375|Caenorhabditis elegans Hypothetical pr... 29 3.0
Z93375-8|CAB07569.1| 3375|Caenorhabditis elegans Hypothetical pr... 29 3.0
AF132883-1|AAD25092.1| 925|Caenorhabditis elegans UNC-52/Perlec... 29 3.0
Z75530-2|CAA99795.2| 351|Caenorhabditis elegans Hypothetical pr... 29 4.0
Z81523-4|CAB04243.1| 824|Caenorhabditis elegans Hypothetical pr... 29 5.2
AY340594-1|AAQ17186.1| 824|Caenorhabditis elegans SPD-2 protein. 29 5.2
AC006708-12|AAT81173.1| 908|Caenorhabditis elegans Hypothetical... 28 6.9
AC006708-11|AAF60426.2| 1019|Caenorhabditis elegans Hypothetical... 28 6.9
AC006610-4|AAK85450.1| 246|Caenorhabditis elegans Hypothetical ... 28 6.9
>L14433-3|AAA27977.1| 2329|Caenorhabditis elegans Yeast prp (splicing
factor) relatedprotein 8 protein.
Length = 2329
Score = 178 bits (433), Expect = 4e-45
Identities = 82/85 (96%), Positives = 83/85 (97%)
Frame = +2
Query: 2 ANPALYVLRERIRKALQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFE 181
ANPA YVLRERIRK LQLYSSEPTEPYL+SQNYGELFSNQIIWFVDDTNVYRVTIHKTFE
Sbjct: 1729 ANPAFYVLRERIRKGLQLYSSEPTEPYLTSQNYGELFSNQIIWFVDDTNVYRVTIHKTFE 1788
Query: 182 GNLTTKPINGAIFIFNPRTGQLFLK 256
GNLTTKPINGAIFIFNPRTGQLFLK
Sbjct: 1789 GNLTTKPINGAIFIFNPRTGQLFLK 1813
Score = 164 bits (398), Expect = 8e-41
Identities = 78/84 (92%), Positives = 80/84 (95%)
Frame = +1
Query: 256 IIHTSVWAGQKRLGQLAKWKTAEEVAALIRSLPVEEQPKQIIVTRKGMLDPLEVHLLDFP 435
IIHTSVWAGQKRL QLAKWKTAEEVAALIRSLPVEEQP+QIIVTRK MLDPLEVHLLDFP
Sbjct: 1814 IIHTSVWAGQKRLSQLAKWKTAEEVAALIRSLPVEEQPRQIIVTRKAMLDPLEVHLLDFP 1873
Query: 436 NIVIKGSELQLPFQACLKVEKFGD 507
NIVIKGSEL LPFQA +KVEKFGD
Sbjct: 1874 NIVIKGSELMLPFQAIMKVEKFGD 1897
Score = 89.8 bits (213), Expect = 2e-18
Identities = 36/50 (72%), Positives = 45/50 (90%)
Frame = +2
Query: 626 VNTERTKVLLKPDKTTFTEPHHIWPTLTDDDWIKVEVQLKDLILADMERR 775
+N ++TKV+LKPDKTT TEPHHIWPTL+DDDWIKVE+ LKD+ILAD ++
Sbjct: 1938 INPDKTKVILKPDKTTITEPHHIWPTLSDDDWIKVELALKDMILADYGKK 1987
Score = 74.9 bits (176), Expect = 6e-14
Identities = 33/38 (86%), Positives = 37/38 (97%)
Frame = +3
Query: 510 ILKATEPQMVLFNLYDDWLKTISSYTAFSRLILILRAL 623
ILKATEPQMVLFNLYDDWLKTISSYTAFSR++LI+R +
Sbjct: 1899 ILKATEPQMVLFNLYDDWLKTISSYTAFSRVVLIMRGM 1936
Score = 33.9 bits (74), Expect = 0.14
Identities = 15/16 (93%), Positives = 15/16 (93%)
Frame = +1
Query: 763 YGKKTNVNVASLTQSE 810
YGKK NVNVASLTQSE
Sbjct: 1984 YGKKNNVNVASLTQSE 1999
>Z93395-6|CAB07708.1| 3375|Caenorhabditis elegans Hypothetical protein
ZC101.2e protein.
Length = 3375
Score = 29.5 bits (63), Expect = 3.0
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +2
Query: 635 ERTKVLLKPDKTTFTEPHHIWPTLTDDD 718
E T +P TT EP+HI+ T DDD
Sbjct: 3019 EPTTTTEEPTTTTTEEPYHIYETSRDDD 3046
>Z93375-8|CAB07569.1| 3375|Caenorhabditis elegans Hypothetical protein
ZC101.2e protein.
Length = 3375
Score = 29.5 bits (63), Expect = 3.0
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +2
Query: 635 ERTKVLLKPDKTTFTEPHHIWPTLTDDD 718
E T +P TT EP+HI+ T DDD
Sbjct: 3019 EPTTTTEEPTTTTTEEPYHIYETSRDDD 3046
>AF132883-1|AAD25092.1| 925|Caenorhabditis elegans UNC-52/Perlecan
protein.
Length = 925
Score = 29.5 bits (63), Expect = 3.0
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +2
Query: 635 ERTKVLLKPDKTTFTEPHHIWPTLTDDD 718
E T +P TT EP+HI+ T DDD
Sbjct: 569 EPTTTTEEPTTTTTEEPYHIYETSRDDD 596
>Z75530-2|CAA99795.2| 351|Caenorhabditis elegans Hypothetical
protein C47E8.4 protein.
Length = 351
Score = 29.1 bits (62), Expect = 4.0
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +2
Query: 2 ANPALYVLRERIRKALQLYSSEPTEPYLSSQNYGELFSN 118
++PA VLR K +Y + EP++ S+ YG F +
Sbjct: 309 SHPAKIVLRSWYEKNKHIYPASRWEPFVPSKKYGRNFDD 347
>Z81523-4|CAB04243.1| 824|Caenorhabditis elegans Hypothetical
protein F32H2.3 protein.
Length = 824
Score = 28.7 bits (61), Expect = 5.2
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +2
Query: 593 QSAHPDTPCFAVNTERTKVLLKP 661
++A P P F +NT RT+V +KP
Sbjct: 321 RAAQPSKPDFRINTTRTRVPIKP 343
>AY340594-1|AAQ17186.1| 824|Caenorhabditis elegans SPD-2 protein.
Length = 824
Score = 28.7 bits (61), Expect = 5.2
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +2
Query: 593 QSAHPDTPCFAVNTERTKVLLKP 661
++A P P F +NT RT+V +KP
Sbjct: 321 RAAQPSKPDFRINTTRTRVPIKP 343
>AC006708-12|AAT81173.1| 908|Caenorhabditis elegans Hypothetical
protein Y110A7A.9b protein.
Length = 908
Score = 28.3 bits (60), Expect = 6.9
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +2
Query: 140 DTNVYRVTIHKTFEGNLTTKPINGAIFIFNP 232
+TN+Y +T HK + N IN +++ NP
Sbjct: 97 NTNIYLITYHKAYR-NTVFIAINSGLYLVNP 126
>AC006708-11|AAF60426.2| 1019|Caenorhabditis elegans Hypothetical
protein Y110A7A.9a protein.
Length = 1019
Score = 28.3 bits (60), Expect = 6.9
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +2
Query: 140 DTNVYRVTIHKTFEGNLTTKPINGAIFIFNP 232
+TN+Y +T HK + N IN +++ NP
Sbjct: 208 NTNIYLITYHKAYR-NTVFIAINSGLYLVNP 237
>AC006610-4|AAK85450.1| 246|Caenorhabditis elegans Hypothetical
protein C30F12.4 protein.
Length = 246
Score = 28.3 bits (60), Expect = 6.9
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +2
Query: 20 VLRERIRKALQLYSSEPTEPYLSSQNY 100
V+R+ IR + YS + PY SSQ Y
Sbjct: 39 VMRQHIRPEISQYSQQQPPPYYSSQVY 65
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,359,966
Number of Sequences: 27780
Number of extensions: 414093
Number of successful extensions: 1009
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 962
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1009
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1998381620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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