Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30392
         (812 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   1.1  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    22   5.9  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    22   5.9  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   7.8  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = -1

Query: 521  SLQNGSPNFSTFKQAWNGSCSSEPLITMLGKSSKWTSSGSN 399
            S +NG P  + F Q +  + SS  L+     +   TSS +N
Sbjct: 896  SSKNGEPTSAAFAQGFATAASSPGLLERASPAFSGTSSPTN 936



 Score = 24.2 bits (50), Expect = 1.5
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = +3

Query: 447 QGFRTAAAVPGLFE 488
           QGF TAA+ PGL E
Sbjct: 909 QGFATAASSPGLLE 922


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = -1

Query: 545 EQDHLRLSSLQNG 507
           E+DHLR+ S+Q G
Sbjct: 223 EEDHLRIISMQMG 235


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 9/15 (60%), Positives = 10/15 (66%), Gaps = 1/15 (6%)
 Frame = +1

Query: 622 CSEHRTHKG-PLETR 663
           CS H THKG P+  R
Sbjct: 570 CSHHLTHKGKPIRMR 584


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = +1

Query: 520 LLSLKWSCSTYMMTG*RLYLHILPS 594
           +L+  W   TY   G   YLH + S
Sbjct: 81  MLARIWKPDTYFYNGKHSYLHTITS 105


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 230,747
Number of Sequences: 438
Number of extensions: 4924
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25853301
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)