Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30392
         (812 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g80070.1 68414.m09373 splicing factor, putative strong simila...   179   2e-45
At4g38780.1 68417.m05491 splicing factor, putative strong simila...   177   7e-45
At4g15233.1 68417.m02334 ABC transporter family protein similar ...    33   0.23 
At3g23890.1 68416.m03002 DNA topoisomerase, ATP-hydrolyzing / DN...    29   4.9  
At3g13090.1 68416.m01639 ABC transporter, putative similar to MR...    29   4.9  
At2g41290.1 68415.m05099 strictosidine synthase family protein s...    28   8.5  
At2g02040.1 68415.m00139 peptide transporter (PTR2-B) / oligopep...    28   8.5  
At1g06770.2 68414.m00719 zinc finger (C3HC4-type RING finger) fa...    28   8.5  
At1g06770.1 68414.m00720 zinc finger (C3HC4-type RING finger) fa...    28   8.5  

>At1g80070.1 68414.m09373 splicing factor, putative strong similarity
            to splicing factor Prp8 [Homo sapiens] GI:3661610;
            contains Pfam profile PF01398: Mov34/MPN/PAD-1 family
          Length = 2382

 Score =  179 bits (435), Expect = 2e-45
 Identities = 82/85 (96%), Positives = 84/85 (98%)
 Frame = +2

Query: 2    ANPALYVLRERIRKALQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFE 181
            +NPALYVLRERIRK LQLYSSEPTEPYLSSQNYGE+FSNQIIWFVDDTNVYRVTIHKTFE
Sbjct: 1783 SNPALYVLRERIRKGLQLYSSEPTEPYLSSQNYGEIFSNQIIWFVDDTNVYRVTIHKTFE 1842

Query: 182  GNLTTKPINGAIFIFNPRTGQLFLK 256
            GNLTTKPINGAIFIFNPRTGQLFLK
Sbjct: 1843 GNLTTKPINGAIFIFNPRTGQLFLK 1867



 Score =  175 bits (427), Expect = 2e-44
 Identities = 112/195 (57%), Positives = 128/195 (65%), Gaps = 10/195 (5%)
 Frame = +1

Query: 256  IIHTSVWAGQKRLGQLAKWKTAEEVAALIRSLPVEEQPKQIIVTRKGMLDPLEVHLLDFP 435
            +IHTSVWAGQKRLGQLAKWKTAEEVAAL+RSLPVEEQPKQIIVTRKGMLDPLEVHLLDFP
Sbjct: 1868 VIHTSVWAGQKRLGQLAKWKTAEEVAALVRSLPVEEQPKQIIVTRKGMLDPLEVHLLDFP 1927

Query: 436  NIVIKGSELQLPFQACLKVEKFGDPF*RLLSLKWSCSTYMMTG*RLYLHILPSVGS-S*Y 612
            NIVIKGSELQLPFQACLK+EKFGD     L LK   +   M    +Y   L S+ S + +
Sbjct: 1928 NIVIKGSELQLPFQACLKIEKFGD-----LILK--ATEPQMVLFNIYDDWLKSISSYTAF 1980

Query: 613  S----VLCSEH-RTHKGPLETR*NHFHGTSPHLAHFN***LDQS*GSTE----GLNIS*Y 765
            S    +L + H    K  +  + +    T PH  H      D      E     L +S Y
Sbjct: 1981 SRLILILRALHVNNEKAKMLLKPDKSVVTEPH--HIWPSLTDDQWMKVEVALRDLILSDY 2038

Query: 766  GKKTNVNVASLTQSE 810
             KK NVN ++LTQSE
Sbjct: 2039 AKKNNVNTSALTQSE 2053



 Score = 81.8 bits (193), Expect = 5e-16
 Identities = 33/50 (66%), Positives = 42/50 (84%)
 Frame = +2

Query: 626  VNTERTKVLLKPDKTTFTEPHHIWPTLTDDDWIKVEVQLKDLILADMERR 775
            VN E+ K+LLKPDK+  TEPHHIWP+LTDD W+KVEV L+DLIL+D  ++
Sbjct: 1992 VNNEKAKMLLKPDKSVVTEPHHIWPSLTDDQWMKVEVALRDLILSDYAKK 2041



 Score = 77.4 bits (182), Expect = 1e-14
 Identities = 36/38 (94%), Positives = 38/38 (100%)
 Frame = +3

Query: 510  ILKATEPQMVLFNLYDDWLKTISSYTAFSRLILILRAL 623
            ILKATEPQMVLFN+YDDWLK+ISSYTAFSRLILILRAL
Sbjct: 1953 ILKATEPQMVLFNIYDDWLKSISSYTAFSRLILILRAL 1990


>At4g38780.1 68417.m05491 splicing factor, putative strong similarity
            to splicing factor Prp8 [Homo sapiens] GI:3661610;
            contains Pfam profile PF01398: Mov34/MPN/PAD-1 family
          Length = 2332

 Score =  177 bits (431), Expect = 7e-45
 Identities = 81/85 (95%), Positives = 83/85 (97%)
 Frame = +2

Query: 2    ANPALYVLRERIRKALQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFE 181
            +NPALYVLRERIRK LQLYSSEPTEPYLSSQNYGE+FSNQIIWFVDDTNVYRVTIHKTFE
Sbjct: 1735 SNPALYVLRERIRKGLQLYSSEPTEPYLSSQNYGEIFSNQIIWFVDDTNVYRVTIHKTFE 1794

Query: 182  GNLTTKPINGAIFIFNPRTGQLFLK 256
            GNLTTKPING IFIFNPRTGQLFLK
Sbjct: 1795 GNLTTKPINGVIFIFNPRTGQLFLK 1819



 Score =  175 bits (427), Expect = 2e-44
 Identities = 81/84 (96%), Positives = 84/84 (100%)
 Frame = +1

Query: 256  IIHTSVWAGQKRLGQLAKWKTAEEVAALIRSLPVEEQPKQIIVTRKGMLDPLEVHLLDFP 435
            IIHTSVWAGQKRLGQLAKWKTAEEVAAL+RSLPVEEQPKQ+IVTRKGMLDPLEVHLLDFP
Sbjct: 1820 IIHTSVWAGQKRLGQLAKWKTAEEVAALVRSLPVEEQPKQVIVTRKGMLDPLEVHLLDFP 1879

Query: 436  NIVIKGSELQLPFQACLKVEKFGD 507
            NIVIKGSELQLPFQACLK+EKFGD
Sbjct: 1880 NIVIKGSELQLPFQACLKIEKFGD 1903



 Score = 76.6 bits (180), Expect = 2e-14
 Identities = 31/50 (62%), Positives = 41/50 (82%)
 Frame = +2

Query: 626  VNTERTKVLLKPDKTTFTEPHHIWPTLTDDDWIKVEVQLKDLILADMERR 775
            VN E+ K+LLKPD +  TEP+HIWP+LTDD W+KVEV L+DLIL+D  ++
Sbjct: 1944 VNNEKAKMLLKPDMSVVTEPNHIWPSLTDDQWMKVEVALRDLILSDYAKK 1993



 Score = 72.9 bits (171), Expect = 2e-13
 Identities = 33/38 (86%), Positives = 35/38 (92%)
 Frame = +3

Query: 510  ILKATEPQMVLFNLYDDWLKTISSYTAFSRLILILRAL 623
            ILKATEPQM LFN+YDDWL T+SSYTAF RLILILRAL
Sbjct: 1905 ILKATEPQMALFNIYDDWLMTVSSYTAFQRLILILRAL 1942


>At4g15233.1 68417.m02334 ABC transporter family protein similar to
            pleiotropic drug resistance like protein [Nicotiana
            tabacum] GI:20522008, PDR5-like ABC transporter
            [Spirodela polyrhiza] GI:1514643; contains Pfam profile
            PF00005: ABC transporter
          Length = 1168

 Score = 33.1 bits (72), Expect = 0.23
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = -2

Query: 187  VSFKGFVNCYTIHIRVINEPNDLIREQFSIVLTGEVRFS 71
            V F G  NC T+   V  E N   RE+FS+V+T  V  +
Sbjct: 1020 VLFSGINNCSTVLFSVATERNVFYRERFSLVVTPNVHIA 1058


>At3g23890.1 68416.m03002 DNA topoisomerase, ATP-hydrolyzing / DNA
           topoisomerase II / DNA gyrase (TOP2) identical to
           SP|P30182 DNA topoisomerase II (EC 5.99.1.3)
           {Arabidopsis thaliana}
          Length = 1473

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
 Frame = -1

Query: 488 FKQAWNGSCS--SEPLITMLGKSSKWTSSGSNIPFRVTIICLGCSSTGSDLIKAATSSAV 315
           +KQ +  +    SEP+IT   KS  WT     + F+  +     +    D++ A  S  V
Sbjct: 190 YKQVFENNMGKKSEPVITKCNKSENWT----KVTFKPDLKKFNMTELEDDVV-ALMSKRV 244

Query: 314 FHLASC 297
           F +A C
Sbjct: 245 FDIAGC 250


>At3g13090.1 68416.m01639 ABC transporter, putative similar to
           MRP-like ABC transporter [Arabidopsis thaliana]
           GI:2316016; contains Pfam profile: PF00005 ABC
           transporter
          Length = 1466

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = -3

Query: 312 PFSKLSKTFLPCPYTSVDDLRNSCPVRGLNIKMAPLMGLVVKFPSKVL 169
           PF+KL + F      S D+         LN+K+  L G  +KF SK+L
Sbjct: 443 PFAKLEEKFQSSLMKSKDNRMKKTSEVLLNMKILKLQGWEMKFLSKIL 490


>At2g41290.1 68415.m05099 strictosidine synthase family protein
           similar to strictosidine synthase [Rauvolfia
           serpentina][SP|P15324]; contains strictosidine synthase
           domain PF03088
          Length = 376

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = +2

Query: 227 NPRTGQLFLKSSTLVYGQGRNVLDSLLNG 313
           NPRTG ++   S+ VY Q RN + ++++G
Sbjct: 164 NPRTGVVYFTDSSSVY-QRRNYIGAMMSG 191


>At2g02040.1 68415.m00139 peptide transporter (PTR2-B) /
           oligopeptide transporter 1-1, putative (OPT1-1)
           identical to peptide transporter PTR2-B SP:P46032 from
           [Arabidopsis thaliana]; contains Pfam profile: PF00854
           POT family; identical to cDNA NT1 GI:510237
          Length = 585

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 22/86 (25%), Positives = 32/86 (37%), Gaps = 1/86 (1%)
 Frame = -1

Query: 524 SSLQNGSPNFSTFKQAWNGSCSSEPLITMLGKSSKWTSSGSNIPFRVTIICL-GCSSTGS 348
           + L  G+ + +T    W G+C   PLI  +   + W           TI C  G    G 
Sbjct: 75  TKLHQGNVSAATNVTTWQGTCYLTPLIGAVLADAYWGRYW-------TIACFSGIYFIGM 127

Query: 347 DLIKAATSSAVFHLASCPRRFCPAHT 270
             +  + S      A C   FCP+ T
Sbjct: 128 SALTLSASVPALKPAECIGDFCPSAT 153


>At1g06770.2 68414.m00719 zinc finger (C3HC4-type RING finger)
           family protein
          Length = 307

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +3

Query: 516 KATEPQMVLFNLYDDWLKTISSYTAFSRLI 605
           +A  P + L+NL D WL+  S++  F+ L+
Sbjct: 256 EAVIPTLTLYNLVDLWLQKSSNHQRFAALV 285


>At1g06770.1 68414.m00720 zinc finger (C3HC4-type RING finger)
           family protein
          Length = 421

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +3

Query: 516 KATEPQMVLFNLYDDWLKTISSYTAFSRLI 605
           +A  P + L+NL D WL+  S++  F+ L+
Sbjct: 370 EAVIPTLTLYNLVDLWLQKSSNHQRFAALV 399


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,314,861
Number of Sequences: 28952
Number of extensions: 389197
Number of successful extensions: 984
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 950
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 984
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1853336000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)