Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30391
         (302 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC776.01 |rpl29||60S ribosomal protein L29|Schizosaccharomyces...    81   5e-17
SPBC342.06c |rtt109|kat11|RTT109 family histone lysine acetyltra...    25   2.4  
SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces pombe...    25   3.2  
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po...    25   3.2  
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF...    24   4.3  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    24   4.3  
SPCC4B3.13 |||MatE family transporter|Schizosaccharomyces pombe|...    24   5.6  
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo...    23   7.5  
SPAC22A12.06c |||serine hydrolase|Schizosaccharomyces pombe|chr ...    23   7.5  
SPCC965.11c |||amino acid transporter |Schizosaccharomyces pombe...    23   9.9  
SPAC1D4.09c |||DUF602 family protein|Schizosaccharomyces pombe|c...    23   9.9  
SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces pomb...    23   9.9  

>SPBC776.01 |rpl29||60S ribosomal protein L29|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 61

 Score = 80.6 bits (190), Expect = 5e-17
 Identities = 34/56 (60%), Positives = 44/56 (78%)
 Frame = +1

Query: 34  MAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFCKKGNLKPAKQ 201
           MAKSKNHTNHNQN+KAHRNGIK+P+K R++S    D KF RNQ+F  +G ++  +Q
Sbjct: 1   MAKSKNHTNHNQNKKAHRNGIKRPQKHRYDSLKYRDAKFRRNQKFANRGTVEAIRQ 56


>SPBC342.06c |rtt109|kat11|RTT109 family histone lysine
           acetyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 369

 Score = 25.0 bits (52), Expect = 2.4
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +1

Query: 34  MAKSKNHTNHNQNRKAHRNGIKKPRK 111
           +AK  +  NHN ++ A +  I +PRK
Sbjct: 340 LAKRDDRKNHNHSKPATQANILQPRK 365


>SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 727

 Score = 24.6 bits (51), Expect = 3.2
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 65  TKTAKLTEMVSKSQGRPGTN 124
           T  A +T++VSK  G PG N
Sbjct: 220 TNPADITDLVSKYAGPPGNN 239


>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1057

 Score = 24.6 bits (51), Expect = 3.2
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +2

Query: 20   ENASKWQSQRIIQIITKTAKLTEMVSKSQGRPGTNPPLAWIQN 148
            E+ S+   ++I    TK  KLT    K++ R      LAW+Q+
Sbjct: 999  EDLSEKDLKKIEAKATKKKKLTRNEIKAKERRARERELAWLQS 1041


>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
           eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 918

 Score = 24.2 bits (50), Expect = 4.3
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +1

Query: 52  HTNHNQNRKAHRNGIKKPRKTRHES 126
           HTN  +NR+  + G  K R  R E+
Sbjct: 887 HTNPQENRRRDKGGSVKRRNERTEN 911


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 24.2 bits (50), Expect = 4.3
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -2

Query: 169 KTFDSLKILDPCQGWIRAWSSLAF*YHFC 83
           K   SL +LD     + AW+SL   Y+ C
Sbjct: 518 KDLQSLNVLDISLKGVNAWNSLETSYYNC 546


>SPCC4B3.13 |||MatE family transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 539

 Score = 23.8 bits (49), Expect = 5.6
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +2

Query: 215 LREKLPEKQRPRNDISY 265
           LR+  P  QRP  D+SY
Sbjct: 50  LRKPTPRVQRPATDVSY 66


>SPCC63.04 |mok14||alpha-1,3-glucan synthase
           Mok14|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1369

 Score = 23.4 bits (48), Expect = 7.5
 Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
 Frame = +2

Query: 38  QSQRIIQIITKTAKLTEM--VSKSQGRPGTNPPLAWIQ-NF*GIKGFARRVT*SQPSNSR 208
           Q++ II  ++ +A L+E+  +S+S    G+     +I  N   I+ F+  +T   P NS+
Sbjct: 797 QAESIISSLSSSA-LSELSYISESSMNIGSRLDERFIDANGVAIRDFSAELTYLTPENSK 855

Query: 209 GRL 217
           G+L
Sbjct: 856 GKL 858


>SPAC22A12.06c |||serine hydrolase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 429

 Score = 23.4 bits (48), Expect = 7.5
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = -2

Query: 223 FSQPPSRVAWLASGY 179
           FSQPP R A   SGY
Sbjct: 138 FSQPPFRFALFFSGY 152


>SPCC965.11c |||amino acid transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 537

 Score = 23.0 bits (47), Expect = 9.9
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +1

Query: 88  NGIKKPRKTRHESTLGM 138
           NGIK+  KTRH S + +
Sbjct: 38  NGIKRGLKTRHVSMMAL 54


>SPAC1D4.09c |||DUF602 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 240

 Score = 23.0 bits (47), Expect = 9.9
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +1

Query: 46  KNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFCKKGNLK 189
           K H+ +  ++K+++NG KK RK   +S        LR  R     N+K
Sbjct: 178 KTHSLNKASKKSNKNGDKK-RKHVSKSNSKHAKHELRTNRMLDGENVK 224


>SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 983

 Score = 23.0 bits (47), Expect = 9.9
 Identities = 8/30 (26%), Positives = 16/30 (53%)
 Frame = +1

Query: 49  NHTNHNQNRKAHRNGIKKPRKTRHESTLGM 138
           +H NH+++RK +   +    +T H   L +
Sbjct: 850 DHINHSKDRKLNTLALSSLLRTNHPDVLAV 879


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,106,247
Number of Sequences: 5004
Number of extensions: 20103
Number of successful extensions: 60
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 75747362
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)