Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30391
         (302 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    24   0.47 
M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee homeobox-...    21   3.3  
U15956-1|AAA67444.1|  129|Apis mellifera hymenoptaecin precursor...    20   5.8  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    20   5.8  
M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee homeobox-...    20   7.7  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    20   7.7  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    20   7.7  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          20   7.7  

>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 23.8 bits (49), Expect = 0.47
 Identities = 8/27 (29%), Positives = 12/27 (44%)
 Frame = +1

Query: 40  KSKNHTNHNQNRKAHRNGIKKPRKTRH 120
           +  NH NHN N+  H +        +H
Sbjct: 420 QDNNHYNHNHNQARHSSKSDNQNNNQH 446


>M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E60. ).
          Length = 109

 Score = 21.0 bits (42), Expect = 3.3
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 203 SRGRLREKLPEKQRPRNDISYKQI 274
           S GR     PE++RPR   S +Q+
Sbjct: 9   SDGRGNGGTPEEKRPRTAFSGEQL 32


>U15956-1|AAA67444.1|  129|Apis mellifera hymenoptaecin precursor
           protein.
          Length = 129

 Score = 20.2 bits (40), Expect = 5.8
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +2

Query: 236 KQRPRNDISYKQ 271
           K RP  DI YKQ
Sbjct: 51  KSRPSLDIDYKQ 62


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 20.2 bits (40), Expect = 5.8
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +1

Query: 109 KTRHESTLGMDPKFL 153
           + RH STL +D K L
Sbjct: 239 ENRHSSTLDIDHKML 253


>M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E30. ).
          Length = 109

 Score = 19.8 bits (39), Expect = 7.7
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +2

Query: 230 PEKQRPRNDISYKQI 274
           PE++RPR   S +Q+
Sbjct: 18  PEEKRPRTAFSAEQL 32


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 19.8 bits (39), Expect = 7.7
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = +1

Query: 43  SKNHTNHNQNRKAHRN 90
           + N+ N+N N+K + N
Sbjct: 100 NNNYNNNNYNKKLYYN 115


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 19.8 bits (39), Expect = 7.7
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = +1

Query: 43  SKNHTNHNQNRKAHRN 90
           + N+ N+N N+K + N
Sbjct: 100 NNNYNNNNYNKKLYYN 115


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 19.8 bits (39), Expect = 7.7
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +1

Query: 73  RKAHRNGIKKPRK 111
           ++AHR GI  P+K
Sbjct: 446 QRAHRLGIDTPKK 458


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,348
Number of Sequences: 438
Number of extensions: 1444
Number of successful extensions: 19
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  6368931
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)