Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30390
         (788 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295016-1|CAL25731.1|   96|Tribolium castaneum ecdysone recepto...    24   1.2  
X72339-1|CAA51066.1|  133|Tribolium castaneum abdominal protein.       23   2.1  
DQ138189-1|ABA03053.1|  162|Tribolium castaneum bursicon protein.      23   2.1  
AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    23   2.1  
AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A prot...    23   2.1  
AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    23   2.1  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    23   3.7  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    23   3.7  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    22   4.9  
AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    22   6.4  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   8.5  
AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    21   8.5  
AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein p...    21   8.5  

>AM295016-1|CAL25731.1|   96|Tribolium castaneum ecdysone receptor
           (isoform B) protein.
          Length = 96

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = -2

Query: 172 RVIPD*CACEKASGVVFQFSPAPLSAHVDVEVVDLE 65
           RV P+  + E  S      SPA   A  D+  VDLE
Sbjct: 8   RVAPEESSSEVTSSSALVMSPANSLASTDIGDVDLE 43


>X72339-1|CAA51066.1|  133|Tribolium castaneum abdominal protein.
          Length = 133

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 5/39 (12%)
 Frame = +1

Query: 52  KELLAQGLLPQRQHERSKEQE-----KIEKQRQMPFHMH 153
           KE+  Q    + + ER K+Q+     KIE+Q     H H
Sbjct: 69  KEINEQARREREEQERHKQQQQEKQQKIEQQTHSSIHQH 107


>DQ138189-1|ABA03053.1|  162|Tribolium castaneum bursicon protein.
          Length = 162

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 13/47 (27%), Positives = 19/47 (40%), Gaps = 3/47 (6%)
 Frame = -1

Query: 788 PGCAPPPLENEPCFSNIRSF---ESTKFPTLSASCSARACIRVGSER 657
           PGC P P+ +  C     S+     +K   +  SC    C +   ER
Sbjct: 53  PGCVPKPIPSFACIGRCASYIQVSGSKIWQMERSC---MCCQESGER 96


>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = +1

Query: 538 SLADMFELPRQRVHSLVSKMIINEELLASLDDPSECAILHR 660
           S   + E+ +    S + +++ N E    L DP++C I HR
Sbjct: 104 SWESLIEVTKTSETSKLQQLVDNIE--HKLSDPNQCVICHR 142


>AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A
           protein.
          Length = 284

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 5/39 (12%)
 Frame = +1

Query: 52  KELLAQGLLPQRQHERSKEQE-----KIEKQRQMPFHMH 153
           KE+  Q    + + ER K+Q+     KIE+Q     H H
Sbjct: 220 KEINEQARREREEQERHKQQQQEKQQKIEQQTHSSIHQH 258


>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
           protein.
          Length = 343

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 5/39 (12%)
 Frame = +1

Query: 52  KELLAQGLLPQRQHERSKEQE-----KIEKQRQMPFHMH 153
           KE+  Q    + + ER K+Q+     KIE+Q     H H
Sbjct: 279 KEINEQARREREEQERHKQQQQEKQQKIEQQTHSSIHQH 317


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
 Frame = +3

Query: 240 PTSHDSKTFYQNLRASE-RQALVGPPESMREHAVRLQGPC 356
           P+S     F + L  SE R A +G PE        L+ PC
Sbjct: 279 PSSEVYSMFDKLLLMSEGRTAFLGSPEEAETFFRELEAPC 318


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
 Frame = +3

Query: 240 PTSHDSKTFYQNLRASE-RQALVGPPESMREHAVRLQGPC 356
           P+S     F + L  SE R A +G PE        L+ PC
Sbjct: 279 PSSEVYSMFDKLLLMSEGRTAFLGSPEEAETFFRELEAPC 318


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = +2

Query: 473 REESLRTYLFTYLTCTRHCHCVLSLTCLNYHVNAYIL 583
           +E+SL   +  +LT     HC L+   +    N YI+
Sbjct: 798 KEQSLAHSVGVFLTIFNAAHCYLATELVLMLKNRYII 834


>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 8/24 (33%), Positives = 11/24 (45%)
 Frame = -1

Query: 452 HEHYQLRPLNPKPWHSFFHSRCNL 381
           H H Q RP    P+ +   + C L
Sbjct: 55  HHHLQARPPQDSPYDASVAAACKL 78


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -1

Query: 422  PKPWHSFFHSRCNLGKLSNHLCA 354
            P P +   + RC LG+L    CA
Sbjct: 1110 PDPHNCNAYYRCVLGELRKQYCA 1132


>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 9/29 (31%), Positives = 12/29 (41%)
 Frame = +2

Query: 701 PTRSEIWWIRMSVYSKNKARSPTGAAHSP 787
           P RS   WI+ + Y       P   A +P
Sbjct: 119 PARSPYEWIKKTSYQSQPNPEPADFADAP 147


>AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein
           protein.
          Length = 249

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 9/29 (31%), Positives = 12/29 (41%)
 Frame = +2

Query: 701 PTRSEIWWIRMSVYSKNKARSPTGAAHSP 787
           P RS   WI+ + Y       P   A +P
Sbjct: 119 PARSPYEWIKKTSYQSQPNPEPADFADAP 147


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,377
Number of Sequences: 336
Number of extensions: 3841
Number of successful extensions: 19
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21376414
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)