Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30390
(788 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF... 85 1e-17
SPAC22A12.03c |csn4||COP9/signalosome complex subunit Csn4 |Schi... 30 0.43
SPBC16D10.02 |trm11||tRNA |Schizosaccharomyces pombe|chr 2|||Manual 28 1.8
SPAC1D4.03c |aut12||autophagy associated protein Aut12|Schizosac... 27 2.3
SPAC1805.06c |hem2||porphobilinogen synthase Hem2 |Schizosacchar... 27 4.0
SPAC2F7.13c |||tryptophan-tRNA ligase |Schizosaccharomyces pombe... 27 4.0
SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|c... 26 7.1
SPCC320.11c ||SPCC330.18|RNA-binding protein|Schizosaccharomyces... 26 7.1
SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces ... 25 9.4
SPCC1183.11 ||SPCC31H12.01|MS ion channel protein 1|Schizosaccha... 25 9.4
SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein Rrp12|Sch... 25 9.4
>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
Length = 918
Score = 85.0 bits (201), Expect = 1e-17
Identities = 42/88 (47%), Positives = 61/88 (69%), Gaps = 3/88 (3%)
Frame = +1
Query: 1 VKEAHGCLAELMMTGKPKELLAQGLLPQRQHERSKEQEKIEKQRQMPFHMHINLELLECV 180
V+E L ++ TG+ KELL QG+ + + + +Q++++KQ +PFHMHINLELLECV
Sbjct: 634 VQETQYALQDISTTGRVKELLGQGIQAPKFGQFTPDQDRLDKQLVLPFHMHINLELLECV 693
Query: 181 YLVSAMLIEIPYMAAHE---FDARRRMI 255
YL +ML+EIP MAA D+R+R+I
Sbjct: 694 YLTCSMLMEIPAMAAASSTASDSRKRVI 721
Score = 62.5 bits (145), Expect = 7e-11
Identities = 32/94 (34%), Positives = 57/94 (60%)
Frame = +1
Query: 487 TYLSVHISHVYASLSLRSLADMFELPRQRVHSLVSKMIINEELLASLDDPSECAILHRSE 666
TYL + + Y S+SL LA F+LP QRV +VS+++ E+ A+LD I R E
Sbjct: 797 TYLLAYAAF-YDSVSLEFLATTFDLPVQRVTVIVSRLLSKREIHAALDQVHGAIIFERVE 855
Query: 667 PTRMQALALQLADKVGNLVDSNERIFEKQGSFSN 768
++++L + L++K L ++NE+++E++ +N
Sbjct: 856 INKLESLTVSLSEKTAQLNEANEKLYEQKTQHTN 889
Score = 48.8 bits (111), Expect = 9e-07
Identities = 23/49 (46%), Positives = 28/49 (57%)
Frame = +2
Query: 362 GDWRACLNYIVNEKMNAKVWDLMVGADNVRAMLGRLIREESLRTYLFTY 508
G+WR C +I K+W LM AD ++ ML IREE LRTYL Y
Sbjct: 758 GEWRRCEEFI----HAIKIWSLMPDADKIKQMLSEKIREEGLRTYLLAY 802
Score = 29.1 bits (62), Expect = 0.76
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +3
Query: 255 SKTFYQNLRASERQALVGPPESMREHAVRLQGPCAE 362
S+ F + L +RQ VGPPE+ RE+ ++ A+
Sbjct: 722 SRPFRRMLEYIDRQLFVGPPENTREYIMQASKALAD 757
>SPAC22A12.03c |csn4||COP9/signalosome complex subunit Csn4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 377
Score = 29.9 bits (64), Expect = 0.43
Identities = 15/42 (35%), Positives = 25/42 (59%)
Frame = +1
Query: 505 ISHVYASLSLRSLADMFELPRQRVHSLVSKMIINEELLASLD 630
+S + S LA F+L ++V ++V+ M+I E L AS+D
Sbjct: 302 LSEFFEVSSTSILAKHFKLSEEQVDTVVADMVIQERLNASID 343
>SPBC16D10.02 |trm11||tRNA |Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 27.9 bits (59), Expect = 1.8
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -1
Query: 446 HYQLRPLNPKPWHSFFHS 393
H +++ LNP PW SF H+
Sbjct: 115 HEKMKELNPAPWDSFKHN 132
>SPAC1D4.03c |aut12||autophagy associated protein
Aut12|Schizosaccharomyces pombe|chr 1|||Manual
Length = 513
Score = 27.5 bits (58), Expect = 2.3
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Frame = +2
Query: 449 RAMLGRLIREESLRTYLFTYLTCTRHCHCVLSLTCLNYHVNAYIL*CLK*SSTRS---SW 619
R L +L+ E+ ++ LFT++ C++ L H N L L T+S S
Sbjct: 263 RDQLSQLLLRETPKSLLFTFIAIRGRLVCMVKAKKLLLHANDLYLLFLSLFRTQSFNDSM 322
Query: 620 HHWM 631
HW+
Sbjct: 323 EHWV 326
>SPAC1805.06c |hem2||porphobilinogen synthase Hem2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 329
Score = 26.6 bits (56), Expect = 4.0
Identities = 14/51 (27%), Positives = 21/51 (41%)
Frame = -1
Query: 764 ENEPCFSNIRSFESTKFPTLSASCSARACIRVGSERCKIAHSLGSSNDAKS 612
EN P ++ FP L +C C C + + G+ N+AKS
Sbjct: 97 ENGPVIKAVKEIRHL-FPELVVACDVCLCEYTDHGHCGLLYEDGTINNAKS 146
>SPAC2F7.13c |||tryptophan-tRNA ligase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 395
Score = 26.6 bits (56), Expect = 4.0
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +1
Query: 469 YT*RVPTYLSVHISHVYASLSLRSLADMFELP 564
YT R P+ S+H+ H+ + + L D+F++P
Sbjct: 86 YTGRGPSSDSMHLGHMIPFMFCKWLQDVFQVP 117
>SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 865
Score = 25.8 bits (54), Expect = 7.1
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +2
Query: 545 LTCLNYHVNAYIL*CLK*SSTRSSWHHWMTRAN 643
L C+NY YIL + SST S +W N
Sbjct: 607 LFCVNYLTQKYILMYVSNSSTESGGGYWRPVVN 639
>SPCC320.11c ||SPCC330.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 180
Score = 25.8 bits (54), Expect = 7.1
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = -1
Query: 437 LRPLNPKPWHSFFHSRCN-LGKLSNHLCAWPLQPHC 333
+RPL + +FF +GK HL P PHC
Sbjct: 1 MRPLTHEETKTFFEKLAQYIGKNITHLIDRPDDPHC 36
>SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 846
Score = 25.4 bits (53), Expect = 9.4
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +2
Query: 56 SYWLKVYYLNVNMSAQRSRRKLK 124
SYWL YY+ NM++ S RK++
Sbjct: 572 SYWL--YYMYANMTSLNSWRKIR 592
>SPCC1183.11 ||SPCC31H12.01|MS ion channel protein
1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1011
Score = 25.4 bits (53), Expect = 9.4
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -1
Query: 683 ACIRVGSERCKIAHSLGSSNDAKS 612
AC+ +G ER I+ SL ND+ S
Sbjct: 571 ACVEIGKERKSISASLRDLNDSIS 594
>SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein
Rrp12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1001
Score = 25.4 bits (53), Expect = 9.4
Identities = 15/69 (21%), Positives = 33/69 (47%)
Frame = +1
Query: 535 RSLADMFELPRQRVHSLVSKMIINEELLASLDDPSECAILHRSEPTRMQALALQLADKVG 714
++L L R + L+ K++ N+E +E + + ++A+A +L +VG
Sbjct: 703 QALPKYVALERLKTWKLLFKLLPNDEFHLLPSAIAEVVLFSKHHDDDLRAMAFELLVEVG 762
Query: 715 NLVDSNERI 741
N + + +I
Sbjct: 763 NRMKNGGKI 771
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,208,127
Number of Sequences: 5004
Number of extensions: 66244
Number of successful extensions: 198
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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