Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30390
(788 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0177 + 1214226-1214294,1214707-1214794,1216095-1216308,121... 173 2e-43
07_01_0181 + 1274177-1274200,1274335-1276161,1276519-1277448,127... 116 3e-26
03_05_0106 + 20880069-20881001 43 3e-04
04_04_0012 + 22145111-22146388 42 7e-04
05_05_0001 + 21410408-21411391 29 4.2
04_04_0799 + 28143878-28145042,28145127-28145290,28146008-281460... 28 7.4
05_07_0009 - 27015346-27015705,27016552-27016676,27016778-270168... 28 9.7
>02_01_0177 + 1214226-1214294,1214707-1214794,1216095-1216308,
1216413-1216738,1216860-1217013,1217377-1217438,
1218078-1218133,1219456-1221279,1221775-1222698,
1222855-1222866
Length = 1242
Score = 173 bits (420), Expect = 2e-43
Identities = 107/262 (40%), Positives = 152/262 (58%), Gaps = 7/262 (2%)
Frame = +1
Query: 7 EAHGCLAELMMTGKPKELLAQGLLPQRQHERSKEQEKIEKQRQMPFHMHINLELLECVYL 186
EAHGCL+EL TG+ KELLAQG+ R HE++ EQE++E++RQMP+HMHINLELLE +L
Sbjct: 897 EAHGCLSELYSTGRVKELLAQGVQQSRYHEKTPEQERLERRRQMPYHMHINLELLEATHL 956
Query: 187 VSAMLIEIPYMAAHEFDARRRMIVKLSIKIYVLVNVRRL------SALLSRCESTQCGCK 348
+ AMLIE+P MAA +D +R + + + + ++ R+ + +T+ K
Sbjct: 957 ICAMLIEVPNMAASTYD--KRKFMNRTFRRLLEISERQTFVGPPENVRDHVMAATRALSK 1014
Query: 349 GHAQR*LESLPKLHRE*KNECQGLGFNGRXXXXXXNARSSYT*RVPTYLSVHISHVYASL 528
G Q+ + + L E L N + + TYL + S Y SL
Sbjct: 1015 GDHQKAFDVINSL------EIWKLLRNKEHVLEMLKLKIKEE-ALRTYLFSY-SSCYQSL 1066
Query: 529 SLRSLADMFELPRQRVHSLVSKMIINEELLASLDDPSECAILHRSEPTRMQALALQLADK 708
SL L MF+L Q+ HS+VSKM+++EEL AS D P++C I H + TR+Q L Q+ADK
Sbjct: 1067 SLDQLTTMFDLSEQQAHSIVSKMMMHEELHASWDQPTKCIIFHNVDQTRLQGLLFQMADK 1126
Query: 709 VGNLVDSNERIFE-KQGSFSNG 771
+ LV+SNER +E K G G
Sbjct: 1127 LSVLVESNERAYEAKTGGTFEG 1148
Score = 39.1 bits (87), Expect = 0.004
Identities = 16/35 (45%), Positives = 25/35 (71%)
Frame = +2
Query: 413 KVWDLMVGADNVRAMLGRLIREESLRTYLFTYLTC 517
++W L+ ++V ML I+EE+LRTYLF+Y +C
Sbjct: 1028 EIWKLLRNKEHVLEMLKLKIKEEALRTYLFSYSSC 1062
Score = 35.9 bits (79), Expect = 0.037
Identities = 14/28 (50%), Positives = 21/28 (75%)
Frame = +3
Query: 255 SKTFYQNLRASERQALVGPPESMREHAV 338
++TF + L SERQ VGPPE++R+H +
Sbjct: 979 NRTFRRLLEISERQTFVGPPENVRDHVM 1006
>07_01_0181 +
1274177-1274200,1274335-1276161,1276519-1277448,
1278314-1278367
Length = 944
Score = 116 bits (278), Expect = 3e-26
Identities = 51/82 (62%), Positives = 66/82 (80%)
Frame = +1
Query: 7 EAHGCLAELMMTGKPKELLAQGLLPQRQHERSKEQEKIEKQRQMPFHMHINLELLECVYL 186
EAHGCL+EL TG+ KELLAQG+ R HE++ EQE++E++RQMP+HMHINLELLE +L
Sbjct: 583 EAHGCLSELYSTGRVKELLAQGVQQSRYHEKTPEQERLERRRQMPYHMHINLELLEATHL 642
Query: 187 VSAMLIEIPYMAAHEFDARRRM 252
+ AMLIE+P MAA +D R+ M
Sbjct: 643 ICAMLIEVPNMAASTYDRRKSM 664
Score = 89.4 bits (212), Expect = 3e-18
Identities = 47/96 (48%), Positives = 63/96 (65%), Gaps = 1/96 (1%)
Frame = +1
Query: 487 TYLSVHISHVYASLSLRSLADMFELPRQRVHSLVSKMIINEELLASLDDPSECAILHRSE 666
TYL + S Y SLSL L MF+L Q+ HS+VSKM+++EEL AS D P++C I H +
Sbjct: 740 TYL-LSYSSCYESLSLDQLTTMFDLSEQQAHSIVSKMMMHEELHASWDQPTKCIIFHNVD 798
Query: 667 PTRMQALALQLADKVGNLVDSNERIFE-KQGSFSNG 771
TR+Q L Q++DK+ LV+SNER +E K G G
Sbjct: 799 QTRLQGLLFQMSDKLSVLVESNERAYEAKTGGTLEG 834
Score = 37.1 bits (82), Expect = 0.016
Identities = 18/52 (34%), Positives = 33/52 (63%)
Frame = +2
Query: 362 GDWRACLNYIVNEKMNAKVWDLMVGADNVRAMLGRLIREESLRTYLFTYLTC 517
GD++ + ++N + ++W L+ ++V ML I+EE+LRTYL +Y +C
Sbjct: 701 GDYQKAFD-VIN---SLEIWKLLRNKEHVLEMLKLKIKEEALRTYLLSYSSC 748
Score = 35.9 bits (79), Expect = 0.037
Identities = 14/28 (50%), Positives = 21/28 (75%)
Frame = +3
Query: 255 SKTFYQNLRASERQALVGPPESMREHAV 338
++TF + L SERQ VGPPE++R+H +
Sbjct: 665 NRTFRRLLEISERQTFVGPPENVRDHVM 692
>03_05_0106 + 20880069-20881001
Length = 310
Score = 42.7 bits (96), Expect = 3e-04
Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Frame = +1
Query: 517 YASLSLRSLADMFELPRQRVHSLVSKMIINEELLASLDDPSECAILHRSEPTR-MQALAL 693
YA + + +A+M ELP V +S+MI++++ +LD + C I+ T + L
Sbjct: 229 YARVEIAHIAEMIELPVDHVEKKLSQMILDKKFAGTLDQGAGCLIIFEDPKTEAIFPATL 288
Query: 694 QLADKVGNLVDS 729
+ VG +VDS
Sbjct: 289 ETISNVGKVVDS 300
>04_04_0012 + 22145111-22146388
Length = 425
Score = 41.5 bits (93), Expect = 7e-04
Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Frame = +1
Query: 517 YASLSLRSLADMFELPRQRVHSLVSKMIINEELLASLDDPSECAILHRSEPTR-MQALAL 693
Y+ + + +A+M ELP V +S+MI++++ +LD + C I+ T + L
Sbjct: 344 YSRVEIAHIAEMIELPVDHVEKKLSQMILDKKFAGTLDQGAGCLIIFEDPKTEAIFPATL 403
Query: 694 QLADKVGNLVDS 729
+ VG +VDS
Sbjct: 404 ETISNVGKVVDS 415
>05_05_0001 + 21410408-21411391
Length = 327
Score = 29.1 bits (62), Expect = 4.2
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +3
Query: 291 RQALVGPPESMREHAVRLQGPCAEVIGEL 377
+ LVG P S EH CA+ +GEL
Sbjct: 224 QDGLVGEPISTEEHGAAAMARCAQALGEL 252
>04_04_0799 +
28143878-28145042,28145127-28145290,28146008-28146070,
28146268-28146491,28146850-28147555
Length = 773
Score = 28.3 bits (60), Expect = 7.4
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = +1
Query: 223 AHEFDARRRMIVKLSIKIYVLVNV-RRLSALLSRCESTQCG 342
AH+ DA R ++ KLS KI + V V ++S +++ + G
Sbjct: 490 AHKIDATRNLLRKLSTKIKIAVRVIAKVSTKINKVRDEELG 530
>05_07_0009 -
27015346-27015705,27016552-27016676,27016778-27016853,
27016923-27017105,27018000-27018077,27018159-27018239,
27018347-27018412,27018491-27018556,27019126-27019176,
27019286-27019378,27019498-27019625,27019713-27019851,
27021039-27021136,27021332-27021401,27021565-27021654
Length = 567
Score = 27.9 bits (59), Expect = 9.7
Identities = 15/59 (25%), Positives = 27/59 (45%)
Frame = +1
Query: 1 VKEAHGCLAELMMTGKPKELLAQGLLPQRQHERSKEQEKIEKQRQMPFHMHINLELLEC 177
++E C L + + L QG P++ H R++E E + Q+P + L+ C
Sbjct: 147 LEERLECFRVLKYDVEAERLSKQGQGPEKGHSRTRELESQDLLEQLPALQQLLYRLVGC 205
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,643,846
Number of Sequences: 37544
Number of extensions: 454556
Number of successful extensions: 1205
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1205
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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