Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30390
         (788 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_724| Best HMM Match : eIF-3c_N (HMM E-Value=0)                     132   2e-31
SB_37182| Best HMM Match : DUF225 (HMM E-Value=1)                      33   0.20 
SB_41306| Best HMM Match : Ribosomal_L19e (HMM E-Value=8.5)            31   0.80 
SB_40156| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.4  
SB_29977| Best HMM Match : IL8 (HMM E-Value=1)                         28   7.5  
SB_6980| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.9  

>SB_724| Best HMM Match : eIF-3c_N (HMM E-Value=0)
          Length = 564

 Score =  132 bits (320), Expect = 2e-31
 Identities = 60/87 (68%), Positives = 74/87 (85%)
 Frame = +1

Query: 1   VKEAHGCLAELMMTGKPKELLAQGLLPQRQHERSKEQEKIEKQRQMPFHMHINLELLECV 180
           +K+AH  L ++  +G+ KELLAQGL+ QRQ ER+ EQEKIEK+RQ+PFHMHINLELLECV
Sbjct: 462 IKDAHNALHDVQSSGRAKELLAQGLMQQRQFERTPEQEKIEKRRQVPFHMHINLELLECV 521

Query: 181 YLVSAMLIEIPYMAAHEFDARRRMIVK 261
           YL SAML+EIP+MAAH +D RRR+I K
Sbjct: 522 YLTSAMLLEIPFMAAHAYDYRRRVISK 548


>SB_37182| Best HMM Match : DUF225 (HMM E-Value=1)
          Length = 1282

 Score = 33.5 bits (73), Expect = 0.20
 Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = -2

Query: 262 VLLSCD-VGHQIRVLPCTESQSASLILNRHTRVIPD*CACEKASGVVFQFSPAPLSAHVD 86
           +  SC  V HQ+ +  C+ S++       H  V P  C+C   S  V     +PLSAHVD
Sbjct: 244 IACSCRCVSHQVLMSMCSPSRA-------HVDVFPIACSCRCVSHRVLMSMCSPLSAHVD 296

Query: 85  V 83
           V
Sbjct: 297 V 297


>SB_41306| Best HMM Match : Ribosomal_L19e (HMM E-Value=8.5)
          Length = 220

 Score = 31.5 bits (68), Expect = 0.80
 Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 8/60 (13%)
 Frame = -1

Query: 719 KFPTLSASCSARACIRVGS---ERCKIAHS-----LGSSNDAKSSSLMIILDTRECTR*R 564
           K+P L+ +     C R G     +C +AHS     LGSSN  +SS  +I    REC + R
Sbjct: 39  KYPDLNENLIREICRRSGEIPWRKCVVAHSSRSRVLGSSNTKQSSEQVIGRGHRECRQPR 98


>SB_40156| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 292

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = -1

Query: 728 ESTKFPTLSASCSARACIRVGSERCKIAHSLGSSNDAKSS 609
           +S   P ++  C  RAC+ V S     A SLG  ND+ SS
Sbjct: 2   DSYFIPWVAVECFKRACLGVRSGAPHFADSLGRPNDSPSS 41


>SB_29977| Best HMM Match : IL8 (HMM E-Value=1)
          Length = 521

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 14/37 (37%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
 Frame = +1

Query: 664 EPTRMQALALQLADKVGNLVD-SNERIFEKQGSFSNG 771
           E T  +A A+ +  K+ +  D S++++F+KQGSF +G
Sbjct: 448 EETGRKATAIDVCAKMQSARDASSKKLFKKQGSFRSG 484


>SB_6980| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 521

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 18/49 (36%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
 Frame = -1

Query: 386 NLGKLSNHLCAWPLQPHCVLSHRLRRA-DKRLTFTST*ILIESFTIMRR 243
           N G LS+  C W L PH      L+ A DKR   T   I  E    + R
Sbjct: 58  NGGYLSHSRCGWALPPHTPWLEALKAALDKRGKLTGNYIPTEDLVDLAR 106


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,763,511
Number of Sequences: 59808
Number of extensions: 521830
Number of successful extensions: 1381
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1254
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1378
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2167838629
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)