Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30390
         (788 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    23   4.3  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   9.9  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   9.9  

>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 13/47 (27%), Positives = 19/47 (40%), Gaps = 3/47 (6%)
 Frame = -1

Query: 788 PGCAPPPLENEPCFSNIRSF---ESTKFPTLSASCSARACIRVGSER 657
           PGC P P+ +  C     S+     +K   +  SC    C +   ER
Sbjct: 41  PGCVPKPIPSYACRGRCSSYLQVSGSKIWQMERSC---MCCQESGER 84


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +2

Query: 116 KLKNNARCLFTCTLIWNYSS 175
           K KNN R   T  L+W  S+
Sbjct: 296 KHKNNRRVWLTILLVWAISA 315


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +2

Query: 620 HHWMTRANVLSC 655
           +HW+ R+NV  C
Sbjct: 797 NHWILRSNVQQC 808


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 216,147
Number of Sequences: 438
Number of extensions: 4572
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24882285
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)