Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30390
         (788 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g56150.1 68416.m06241 eukaryotic translation initiation facto...   175   4e-44
At3g22860.1 68416.m02882 eukaryotic translation initiation facto...   153   1e-37
At3g61820.1 68416.m06939 aspartyl protease family protein contai...    29   4.6  
At5g48740.1 68418.m06032 leucine-rich repeat family protein / pr...    28   8.1  

>At3g56150.1 68416.m06241 eukaryotic translation initiation factor 3
            subunit 8 / eIF3 p110 / eIF3c / p105 (TIF3C1) nearly
            identical to SP|O49160 Eukaryotic translation initiation
            factor 3 subunit 8 (eIF3 p110) (eIF3c) (p105)
            {Arabidopsis thaliana}
          Length = 900

 Score =  175 bits (425), Expect = 4e-44
 Identities = 108/264 (40%), Positives = 154/264 (58%), Gaps = 5/264 (1%)
 Frame = +1

Query: 1    VKEAHGCLAELMMTGKPKELLAQGLLPQRQHERSKEQEKIEKQRQMPFHMHINLELLECV 180
            + E+H CL+EL    + +ELLAQG+   R HE++ EQE++E++RQMP+HMH+NLELLE V
Sbjct: 557  ITESHSCLSELYSGQRVRELLAQGVSQSRYHEKTPEQERMERRRQMPYHMHLNLELLEAV 616

Query: 181  YLVSAMLIEIPYMAAHEFDARRRMIVKLSIKIYVLVNVRRLSALLSRCE-----STQCGC 345
            +L+ AML+E+P MAA+  DA+RR+I K   ++  +   +  +A           +T+   
Sbjct: 617  HLICAMLLEVPNMAANSHDAKRRVISKNFRRLLEISERQAFTAPPENVRDHVMAATRALT 676

Query: 346  KGHAQR*LESLPKLHRE*KNECQGLGFNGRXXXXXXNARSSYT*RVPTYLSVHISHVYAS 525
            KG  Q+  E L  L      E   L  N          R      + TYL  + S  Y S
Sbjct: 677  KGDFQKAFEVLNSL------EVWRLLKNRDSILDMVKDRIKEE-ALRTYLFTY-SSSYES 728

Query: 526  LSLRSLADMFELPRQRVHSLVSKMIINEELLASLDDPSECAILHRSEPTRMQALALQLAD 705
            LSL  LA MF++   +VHS+VSKM+INEEL AS D P+ C + H  + +R+Q+LA QL +
Sbjct: 729  LSLDQLAKMFDVSEPQVHSIVSKMMINEELHASWDQPTRCIVFHEVQHSRLQSLAFQLTE 788

Query: 706  KVGNLVDSNERIFEKQGSFSNGGG 777
            K+  L +SNER  E   S + GGG
Sbjct: 789  KLSILAESNERAME---SRTGGGG 809



 Score = 37.9 bits (84), Expect = 0.008
 Identities = 18/38 (47%), Positives = 27/38 (71%), Gaps = 1/38 (2%)
 Frame = +2

Query: 398 EKMNA-KVWDLMVGADNVRAMLGRLIREESLRTYLFTY 508
           E +N+ +VW L+   D++  M+   I+EE+LRTYLFTY
Sbjct: 685 EVLNSLEVWRLLKNRDSILDMVKDRIKEEALRTYLFTY 722



 Score = 33.9 bits (74), Expect = 0.12
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = +3

Query: 255 SKTFYQNLRASERQALVGPPESMREHAV 338
           SK F + L  SERQA   PPE++R+H +
Sbjct: 642 SKNFRRLLEISERQAFTAPPENVRDHVM 669


>At3g22860.1 68416.m02882 eukaryotic translation initiation factor 3
            subunit 8, putative / eIF3c, putative similar to
            eukaryotic translation initiation factor 3 subunit 8
            (eIF3 p110) [Arabidopsis thaliana] SWISS-PROT:O49160
          Length = 800

 Score =  153 bits (371), Expect = 1e-37
 Identities = 92/256 (35%), Positives = 140/256 (54%), Gaps = 5/256 (1%)
 Frame = +1

Query: 1    VKEAHGCLAELMMTGKPKELLAQGLLPQRQHERSKEQEKIEKQRQMPFHMHINLELLECV 180
            + E+H CL+EL    + +ELL QG+   R HE++ EQ  +E++ Q+P+HM+INLELLE V
Sbjct: 510  ITESHSCLSELYSGNRVRELLGQGVSQSRDHEKTTEQMLMERRTQIPYHMNINLELLEAV 569

Query: 181  YLVSAMLIEIPYMAAHEFDARRRMIVKLSIKIYVLVNVRRLSA-----LLSRCESTQCGC 345
            YL  AML+E+P MAA+  D++ + I K   ++      +  +A      +    +T+   
Sbjct: 570  YLTCAMLLEVPNMAANSHDSKHKPISKNIQRLLEKSEKQAFTAPPENVRVHVIAATRALI 629

Query: 346  KGHAQR*LESLPKLHRE*KNECQGLGFNGRXXXXXXNARSSYT*RVPTYLSVHISHVYAS 525
            KG+ Q     L  L      +   L F  R         S     + TYL  + S  Y S
Sbjct: 630  KGNFQEAFSVLNSL------DIWRL-FKNRDSILDMVKASISEVALRTYLFTYSSSCYKS 682

Query: 526  LSLRSLADMFELPRQRVHSLVSKMIINEELLASLDDPSECAILHRSEPTRMQALALQLAD 705
            LSL  LA MF++    V+S+VSKM+IN+EL A+ D P++C + H  +  R Q+LA Q+ +
Sbjct: 683  LSLAELAKMFDISESHVYSIVSKMMINKELNATWDQPTQCIVFHEVQHNRAQSLAFQITE 742

Query: 706  KVGNLVDSNERIFEKQ 753
            K+  L +SNE   E +
Sbjct: 743  KLATLAESNESAMESK 758



 Score = 33.1 bits (72), Expect = 0.22
 Identities = 18/44 (40%), Positives = 25/44 (56%)
 Frame = +2

Query: 416 VWDLMVGADNVRAMLGRLIREESLRTYLFTYLTCTRHCHCVLSL 547
           +W L    D++  M+   I E +LRTYLFTY   +  C+  LSL
Sbjct: 645 IWRLFKNRDSILDMVKASISEVALRTYLFTY---SSSCYKSLSL 685



 Score = 29.9 bits (64), Expect = 2.0
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +3

Query: 255 SKTFYQNLRASERQALVGPPESMREHAV 338
           SK   + L  SE+QA   PPE++R H +
Sbjct: 595 SKNIQRLLEKSEKQAFTAPPENVRVHVI 622


>At3g61820.1 68416.m06939 aspartyl protease family protein contains
           Pfam domain, PF00026: eukaryotic aspartyl protease
          Length = 483

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 18/31 (58%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
 Frame = +1

Query: 487 TYLSVHISHVYA--SLSLRSLADMFELPRQR 573
           T LSVH+SHV A  S S  S AD+F L  QR
Sbjct: 59  TSLSVHLSHVDALSSFSDASPADLFNLRLQR 89


>At5g48740.1 68418.m06032 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 895

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 22/54 (40%), Positives = 29/54 (53%), Gaps = 5/54 (9%)
 Frame = +1

Query: 514 VYASLSLRSLADMFELPRQRVHSL--VSKMIINEELLASLD---DPSECAILHR 660
           VY  LS  SLAD    PR + HSL  VS++ +  +    LD   + SE  I+HR
Sbjct: 678 VYEYLSGGSLADHLYGPRSKRHSLNWVSRLKVAVDAAKGLDYLHNGSEPRIIHR 731


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,966,442
Number of Sequences: 28952
Number of extensions: 351495
Number of successful extensions: 957
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 923
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 957
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1775300800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)