Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30389
(790 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9 |Schizos... 36 0.007
SPAC5H10.01 |||DUF1445 family protein|Schizosaccharomyces pombe|... 29 1.0
SPCC18.17c |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 27 3.1
SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po... 26 5.4
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 26 7.1
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb... 26 7.1
SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb... 26 7.1
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 26 7.1
SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha... 25 9.4
>SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 532
Score = 35.9 bits (79), Expect = 0.007
Identities = 18/57 (31%), Positives = 31/57 (54%)
Frame = -3
Query: 446 TSESGSKHGLVVFT***PPQGTQMYEPGVLTQSRPLGQLARPSAHSSTSTQCSLRLS 276
TS SKH V F+ PP +++P + + S +GQ+ +P+ HS+ S + +S
Sbjct: 288 TSSFSSKHRSVTFS---PPDLAILFDPSITSPSSSVGQIPQPTDHSALSPSKPMSIS 341
>SPAC5H10.01 |||DUF1445 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 301
Score = 28.7 bits (61), Expect = 1.0
Identities = 12/44 (27%), Positives = 22/44 (50%)
Frame = +2
Query: 29 VTLRSPAARERRCMPKSTSPYYECEGCPSGYQWNGYTCVDMDEC 160
V++R ++ + K TS Y C G P + W+G + + +C
Sbjct: 202 VSMRPYPEKDLERIRKITSAYTNCHGEPVAWGWDGAKKIGVKDC 245
>SPCC18.17c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 488
Score = 27.1 bits (57), Expect = 3.1
Identities = 20/86 (23%), Positives = 31/86 (36%), Gaps = 3/86 (3%)
Frame = -1
Query: 331 WLVRQRTRPHPRNVPFVSHCQCPASPATCEPWRTRPTGEAAFFVTTRDQIITGPNQIAF- 155
WL R+ P F P + WR P + V T I Q+A+
Sbjct: 344 WLTRRFLMDEPGMSSFAHALLQPDHNLWMQLWRILPPNTLSTLVNTASSPIPRSRQLAYQ 403
Query: 154 --VHIHARVPIPLVAAGTSFTLVIRA 83
+HI PI + + G + ++ A
Sbjct: 404 CLLHIAQNSPIQIASEGFAIRHLLEA 429
>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 507
Score = 26.2 bits (55), Expect = 5.4
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = -2
Query: 360 IDAKPSPWTVGSSV-SALVHIHAMFPSSLIASAPP 259
+D + T+ S V SA + + PSS+I++APP
Sbjct: 197 VDTDSASATISSVVDSATSSVSTVIPSSIISAAPP 231
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 25.8 bits (54), Expect = 7.1
Identities = 17/44 (38%), Positives = 23/44 (52%)
Frame = -2
Query: 330 GSSVSALVHIHAMFPSSLIASAPPARLPVNPGGHGPQVKPPSSL 199
GS+VS++ + P L AS P P P H PQV PP+ +
Sbjct: 1413 GSNVSSIEDETSTMP--LKASQPTN--PGAPSNHAPQVVPPAPM 1452
>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1254
Score = 25.8 bits (54), Expect = 7.1
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +3
Query: 552 LDRDLDGHPDEQLPCNEPRCKKDNCPDVSNS 644
+D D+DG+ D + P KK++ + SNS
Sbjct: 256 MDEDVDGYSDHSVSVAAPIPKKESRKESSNS 286
>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1328
Score = 25.8 bits (54), Expect = 7.1
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 8/57 (14%)
Frame = -2
Query: 288 PSSLIAS--APPARLPVNPGGHGP------QVKPPSSLRHETRSSQGRIKSHSSIST 142
P+S S +PP+ N H P QV PP SL H+++S + HS+ T
Sbjct: 1236 PTSTFPSPPSPPSSSVWNKREHHPKPFSLHQVPPPESLIHKSKSKFSKGNHHSTNGT 1292
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 25.8 bits (54), Expect = 7.1
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -2
Query: 288 PSSLIASAPPARLPVNPGGHGPQVKPPSS 202
P S+ +S PP R+P P + PPS+
Sbjct: 233 PPSIPSSRPPERVPSLSAPAPPPIPPPSN 261
>SPAC926.06c |||leucine-rich repeat protein,
unknown|Schizosaccharomyces pombe|chr 1|||Manual
Length = 621
Score = 25.4 bits (53), Expect = 9.4
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Frame = -2
Query: 273 ASAPPARL---PVNPGGHGPQVKPPSSLRHETRSSQGRIKSHSSISTHVY 133
ASAP + PVN H P +K S+LR ++S+ RI S+ ++ V+
Sbjct: 505 ASAPERVISLNPVNQKSHSPAIKSSSTLR---KASKTRIVDLSAPNSAVF 551
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,085,933
Number of Sequences: 5004
Number of extensions: 65046
Number of successful extensions: 191
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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