Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30389
         (790 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           27   0.15 
M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee homeobox-...    27   0.20 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             26   0.46 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   4.3  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   4.3  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   7.5  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   9.9  

>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 27.5 bits (58), Expect = 0.15
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -3

Query: 194 TRPDHHRAESNRIRPYPRTCTHSTGS 117
           T P H + +S ++RPYP    H+ G+
Sbjct: 216 TVPKHSKTKSPKLRPYPNWEWHTVGN 241


>M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H55. ).
          Length = 86

 Score = 27.1 bits (57), Expect = 0.20
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -2

Query: 165 KSHSSISTHVYPFHW*PLGHP 103
           K H   S ++ P+H  P GHP
Sbjct: 65  KEHKMASMNIVPYHMSPYGHP 85


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 25.8 bits (54), Expect = 0.46
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = +1

Query: 256  GWRGTGNERRREHCVDVDECADGRANCPRGRLCVNTPGSYICVP 387
            G +GT  +R +    D D   +      RG + V+  GSY  VP
Sbjct: 1029 GGKGTRPKRGKYRNYDRDSLVEAVRAVQRGEMSVHRAGSYYGVP 1072


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 11/52 (21%), Positives = 18/52 (34%)
 Frame = -1

Query: 331 WLVRQRTRPHPRNVPFVSHCQCPASPATCEPWRTRPTGEAAFFVTTRDQIIT 176
           W+V        RN     HCQ    P     W+     ++  +   R++  T
Sbjct: 712 WIVEPTDVSVERNKHVALHCQAQGVPTPTIVWKKATGSKSGEYEELRERAYT 763


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 11/52 (21%), Positives = 18/52 (34%)
 Frame = -1

Query: 331 WLVRQRTRPHPRNVPFVSHCQCPASPATCEPWRTRPTGEAAFFVTTRDQIIT 176
           W+V        RN     HCQ    P     W+     ++  +   R++  T
Sbjct: 708 WIVEPTDVSVERNKHVALHCQAQGVPTPTIVWKKATGSKSGEYEELRERAYT 759


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 8/22 (36%), Positives = 9/22 (40%)
 Frame = +2

Query: 140 CVDMDECDLIRPCDDLVSCRNE 205
           C D D CD    C     C N+
Sbjct: 749 CCDFDACDCEMTCPAGCKCYND 770


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +3

Query: 732 CPLTPNPDQL 761
           CPL PNP  L
Sbjct: 219 CPLNPNPQPL 228


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 213,171
Number of Sequences: 438
Number of extensions: 4877
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24882285
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)