Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30388
         (851 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein S6|Schizo...   118   8e-28
SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein S6|Schizosacch...   118   1e-27
SPBC19G7.03c |rps3002|rps30-2, rps30|40S ribosomal protein S30|S...    45   2e-05
SPAC19B12.04 |rps3001|rps30-1|40S ribosomal protein S30|Schizosa...    45   2e-05

>SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score =  118 bits (285), Expect = 8e-28
 Identities = 65/113 (57%), Positives = 80/113 (70%), Gaps = 3/113 (2%)
 Frame = +2

Query: 509 GFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQ 688
           GFPM QGVL   RVRLL+  GH CYRPRRDGERKRKSVRGCIV  +L+VLAL IV++G Q
Sbjct: 60  GFPMFQGVLLPHRVRLLLRAGHPCYRPRRDGERKRKSVRGCIVGQDLAVLALAIVKQGEQ 119

Query: 689 ENSWID*WKCTPPSR--SQTCFQNP*AFNLSKEDDVRRYVVKR-VLPAKEGKE 838
           +   +     T P R   +   +    FNLSKEDDVR++V++R V+P KEGK+
Sbjct: 120 DIPGLT--DVTVPKRLGPKRASKIRRFFNLSKEDDVRQFVIRREVVPKKEGKK 170



 Score =  109 bits (263), Expect = 4e-25
 Identities = 66/151 (43%), Positives = 87/151 (57%), Gaps = 1/151 (0%)
 Frame = +3

Query: 333 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQD 512
           MKLN+SYPA G QKL E+ D+ +LR+F EKRMG EV  D +G E+ GYV ++ GGNDKQ 
Sbjct: 1   MKLNISYPANGTQKLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQG 60

Query: 513 SR*NRAS*QTAVFVF*CQRATHVTDRAAMERENVNQFVDVLLTPISRSWL-LLLCARVPR 689
               +        V    RA H   R   + E   + V   +     + L L +  +  +
Sbjct: 61  FPMFQGV-LLPHRVRLLLRAGHPCYRPRRDGERKRKSVRGCIVGQDLAVLALAIVKQGEQ 119

Query: 690 KIPGLTDGNVPRRLGPKRASKIRKRSTLAKK 782
            IPGLTD  VP+RLGPKRASKIR+   L+K+
Sbjct: 120 DIPGLTDVTVPKRLGPKRASKIRRFFNLSKE 150


>SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score =  118 bits (284), Expect = 1e-27
 Identities = 64/113 (56%), Positives = 80/113 (70%), Gaps = 3/113 (2%)
 Frame = +2

Query: 509 GFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQ 688
           GFPM QGVL   RVRLL+  GH CYRPRRDGERKRKSVRGCIV  +L+VLAL I+++G Q
Sbjct: 60  GFPMFQGVLLPHRVRLLLRAGHPCYRPRRDGERKRKSVRGCIVGQDLAVLALAIIKQGEQ 119

Query: 689 ENSWID*WKCTPPSR--SQTCFQNP*AFNLSKEDDVRRYVVKR-VLPAKEGKE 838
           +   +     T P R   +   +    FNLSKEDDVR++V++R V+P KEGK+
Sbjct: 120 DIPGLT--DVTVPKRLGPKRASKIRRFFNLSKEDDVRQFVIRREVVPKKEGKK 170



 Score =  109 bits (263), Expect = 4e-25
 Identities = 66/151 (43%), Positives = 87/151 (57%), Gaps = 1/151 (0%)
 Frame = +3

Query: 333 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQD 512
           MKLN+SYPA G QKL E+ D+ +LR+F EKRMG EV  D +G E+ GYV ++ GGNDKQ 
Sbjct: 1   MKLNISYPANGTQKLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQG 60

Query: 513 SR*NRAS*QTAVFVF*CQRATHVTDRAAMERENVNQFVDVLLTPISRSWL-LLLCARVPR 689
               +        V    RA H   R   + E   + V   +     + L L +  +  +
Sbjct: 61  FPMFQGV-LLPHRVRLLLRAGHPCYRPRRDGERKRKSVRGCIVGQDLAVLALAIIKQGEQ 119

Query: 690 KIPGLTDGNVPRRLGPKRASKIRKRSTLAKK 782
            IPGLTD  VP+RLGPKRASKIR+   L+K+
Sbjct: 120 DIPGLTDVTVPKRLGPKRASKIRRFFNLSKE 150


>SPBC19G7.03c |rps3002|rps30-2, rps30|40S ribosomal protein
          S30|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 61

 Score = 44.8 bits (101), Expect = 2e-05
 Identities = 20/21 (95%), Positives = 20/21 (95%)
 Frame = -2

Query: 88 GKVHGSLARAGKVKGQTPKVE 26
          GKVHGSLARAGKVK QTPKVE
Sbjct: 2  GKVHGSLARAGKVKSQTPKVE 22


>SPAC19B12.04 |rps3001|rps30-1|40S ribosomal protein
          S30|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 61

 Score = 44.8 bits (101), Expect = 2e-05
 Identities = 20/21 (95%), Positives = 20/21 (95%)
 Frame = -2

Query: 88 GKVHGSLARAGKVKGQTPKVE 26
          GKVHGSLARAGKVK QTPKVE
Sbjct: 2  GKVHGSLARAGKVKSQTPKVE 22


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,463,656
Number of Sequences: 5004
Number of extensions: 71688
Number of successful extensions: 146
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)