Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30388
(851 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1309 + 25669394-25669399,25669520-25669584,25670543-256706... 101 6e-22
03_03_0207 - 15455163-15455389,15455623-15455895,15455991-154560... 101 7e-22
06_01_0507 + 3655570-3655573,3655648-3655832 44 2e-04
04_04_0165 + 23247265-23247472,23248115-23248407,23249182-232492... 32 0.67
02_02_0664 - 12747888-12747900,12748161-12748229,12748332-127483... 29 4.7
02_05_0956 - 33064104-33066425 28 8.2
>07_03_1309 +
25669394-25669399,25669520-25669584,25670543-25670600,
25670683-25670791,25670872-25671144,25671348-25671589
Length = 250
Score = 101 bits (243), Expect = 6e-22
Identities = 58/117 (49%), Positives = 75/117 (64%), Gaps = 4/117 (3%)
Frame = +2
Query: 509 GFPMKQGVLTNSRVRLLMSKGHSCYRP--RRDGERKRKSVRGCIVDANLSVLALVIVRKG 682
GFPMKQGVLT RVRLL+ +G C+R RRDGER+RKSVRGCIV +LSV+ LVIV+KG
Sbjct: 60 GFPMKQGVLTAGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSQDLSVINLVIVKKG 119
Query: 683 AQENSWID*WKCTPPSRSQTCFQNP*AFNLSKEDDVRRYV--VKRVLPAKEGKENAK 847
+ + + + + FNLSK+DDVR+YV +R K GK+ +K
Sbjct: 120 ENDLPGLTDTEKPRMRGPKRASKIRKLFNLSKDDDVRKYVNTYRRTFTTKNGKKVSK 176
Score = 95.5 bits (227), Expect = 5e-20
Identities = 58/152 (38%), Positives = 79/152 (51%), Gaps = 3/152 (1%)
Frame = +3
Query: 333 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQD 512
MK N++ P TGCQK E+ D+ KLR F++KR+ EV D LG+E+KGYV ++ GG DKQ
Sbjct: 1 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60
Query: 513 SR*NRAS*QTAVFVF*CQRATHVTDRAAMERENVNQFVDVLLTPISRSWL---LLLCARV 683
+ R T R R+ + V +S+ L++ +
Sbjct: 61 FPMKQGVLTAGRVRLLLHRGTPCF-RGYGRRDGERRRKSVRGCIVSQDLSVINLVIVKKG 119
Query: 684 PRKIPGLTDGNVPRRLGPKRASKIRKRSTLAK 779
+PGLTD PR GPKRASKIRK L+K
Sbjct: 120 ENDLPGLTDTEKPRMRGPKRASKIRKLFNLSK 151
>03_03_0207 -
15455163-15455389,15455623-15455895,15455991-15456099,
15456186-15456243,15457002-15457066,15457190-15457195
Length = 245
Score = 101 bits (242), Expect = 7e-22
Identities = 57/117 (48%), Positives = 76/117 (64%), Gaps = 4/117 (3%)
Frame = +2
Query: 509 GFPMKQGVLTNSRVRLLMSKGHSCYRP--RRDGERKRKSVRGCIVDANLSVLALVIVRKG 682
GFPMKQGVLT+ RVRLL+ +G C+R RRDGER+RKSVRGCIV +LSV+ LVIV+KG
Sbjct: 60 GFPMKQGVLTSGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSQDLSVINLVIVKKG 119
Query: 683 AQENSWID*WKCTPPSRSQTCFQNP*AFNLSKEDDVRRYV--VKRVLPAKEGKENAK 847
+ + + + + FNL+K+DDVR+YV +R K GK+ +K
Sbjct: 120 DNDLPGLTDTEKPRMRGPKRASKIRKLFNLAKDDDVRKYVNTYRRTFTTKNGKKVSK 176
Score = 98.7 bits (235), Expect = 5e-21
Identities = 60/152 (39%), Positives = 80/152 (52%), Gaps = 3/152 (1%)
Frame = +3
Query: 333 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQD 512
MK N++ P TGCQK E+ D+ KLR FY+KR+ EV D LG+E+KGYV ++ GG DKQ
Sbjct: 1 MKFNIANPTTGCQKKLEIDDDQKLRAFYDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60
Query: 513 SR*NRAS*QTAVFVF*CQRATHVTDRAAMERENVNQFVDVLLTPISRSWL---LLLCARV 683
+ + R T R R+ + V +S+ L++ +
Sbjct: 61 FPMKQGVLTSGRVRLLLHRGTPCF-RGYGRRDGERRRKSVRGCIVSQDLSVINLVIVKKG 119
Query: 684 PRKIPGLTDGNVPRRLGPKRASKIRKRSTLAK 779
+PGLTD PR GPKRASKIRK LAK
Sbjct: 120 DNDLPGLTDTEKPRMRGPKRASKIRKLFNLAK 151
>06_01_0507 + 3655570-3655573,3655648-3655832
Length = 62
Score = 44.0 bits (99), Expect = 2e-04
Identities = 19/20 (95%), Positives = 20/20 (100%)
Frame = -2
Query: 88 GKVHGSLARAGKVKGQTPKV 29
GKVHGSLARAGKV+GQTPKV
Sbjct: 2 GKVHGSLARAGKVRGQTPKV 21
>04_04_0165 +
23247265-23247472,23248115-23248407,23249182-23249239,
23249302-23250014
Length = 423
Score = 31.9 bits (69), Expect = 0.67
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -1
Query: 248 PGVHWSDQGTHSYSCCSW**RPYSIIMWS 162
PG+HW++Q YS CS P I MW+
Sbjct: 378 PGIHWNNQWMRGYSDCSHWCLPGPIDMWN 406
>02_02_0664 -
12747888-12747900,12748161-12748229,12748332-12748395,
12749540-12749558,12749777-12749843,12749934-12749953,
12750079-12750248,12751646-12751823
Length = 199
Score = 29.1 bits (62), Expect = 4.7
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -1
Query: 251 WPGVHWSDQGTHSY 210
WPG+HWSD T Y
Sbjct: 53 WPGLHWSDSSTPLY 66
>02_05_0956 - 33064104-33066425
Length = 773
Score = 28.3 bits (60), Expect = 8.2
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = -2
Query: 826 LGWEHAFDDITTYIIFFAKV 767
+G EHA DD++TYII A V
Sbjct: 23 VGVEHATDDVSTYIIHVAHV 42
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,092,676
Number of Sequences: 37544
Number of extensions: 534392
Number of successful extensions: 1567
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1502
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1561
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2373961368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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