Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30388
(851 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_48378| Best HMM Match : Ribosomal_S6e (HMM E-Value=0) 139 2e-33
SB_57861| Best HMM Match : Ribosomal_S30 (HMM E-Value=2e-32) 41 0.001
SB_18876| Best HMM Match : DUF1040 (HMM E-Value=2.9) 32 0.68
SB_36564| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.7
SB_40804| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_31354| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_27892| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_4753| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
SB_22568| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
>SB_48378| Best HMM Match : Ribosomal_S6e (HMM E-Value=0)
Length = 212
Score = 139 bits (337), Expect = 2e-33
Identities = 72/112 (64%), Positives = 86/112 (76%), Gaps = 2/112 (1%)
Frame = +2
Query: 509 GFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQ 688
GFPMKQG++TN RVRLL+SKGHSCYRPRR GERKRKSVRGCIVD+ LSVL+LVIV+KG Q
Sbjct: 27 GFPMKQGIMTNGRVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDSQLSVLSLVIVKKGEQ 86
Query: 689 ENSWID*WKCTPPSR--SQTCFQNP*AFNLSKEDDVRRYVVKRVLPAKEGKE 838
+ + T P R + + FNLSKEDDVR+YV++R LP KEGK+
Sbjct: 87 DIPGLT--DNTIPRRLGPKRVGKIRKMFNLSKEDDVRQYVIRRPLPEKEGKK 136
Score = 72.9 bits (171), Expect = 3e-13
Identities = 47/117 (40%), Positives = 59/117 (50%), Gaps = 1/117 (0%)
Frame = +3
Query: 435 EVEADQLGDEWKGYVLRVAGGNDKQDSR*NRAS*QTAVFVF*CQRATHVTDRAAMERENV 614
EV + LGDEWKGYV R+ GGNDKQ + T V H R E
Sbjct: 2 EVSGECLGDEWKGYVFRITGGNDKQGFP-MKQGIMTNGRVRLLLSKGHSCYRPRRTGERK 60
Query: 615 NQFVDVLLTPISRSWL-LLLCARVPRKIPGLTDGNVPRRLGPKRASKIRKRSTLAKK 782
+ V + S L L++ + + IPGLTD +PRRLGPKR KIRK L+K+
Sbjct: 61 RKSVRGCIVDSQLSVLSLVIVKKGEQDIPGLTDNTIPRRLGPKRVGKIRKMFNLSKE 117
>SB_57861| Best HMM Match : Ribosomal_S30 (HMM E-Value=2e-32)
Length = 61
Score = 41.1 bits (92), Expect = 0.001
Identities = 18/20 (90%), Positives = 19/20 (95%)
Frame = -2
Query: 85 KVHGSLARAGKVKGQTPKVE 26
KVHGSLARAGKVK QTPKV+
Sbjct: 2 KVHGSLARAGKVKSQTPKVD 21
>SB_18876| Best HMM Match : DUF1040 (HMM E-Value=2.9)
Length = 725
Score = 31.9 bits (69), Expect = 0.68
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = +2
Query: 203 SKSTNAFLDLTNGLLAIASRTCVDCPLICNCIL*NLIDGIDRS 331
S +T +DL NG + S C P++ NC L N++ I+R+
Sbjct: 51 SLTTKEAIDLLNGN-TVQSLACPSEPMVLNCFLNNVVQAIERN 92
>SB_36564| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 422
Score = 29.9 bits (64), Expect = 2.7
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Frame = -3
Query: 543 LFVRTPCFIGNPACRCRQRHEVHS-PSIHR---LTDQPLLRRPCAFR 415
L ++TPC+ +PA Q + P +R +TD PLL+ PC +R
Sbjct: 207 LLLQTPCYYRHPAIPLLQTPCYYRHPRYYRHPTITDIPLLQTPCYYR 253
Score = 28.3 bits (60), Expect = 8.4
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = -3
Query: 543 LFVRTPCFIGNPACRCRQRHEVHSPSIHR-LTDQPLLRRPCAFR 415
L ++TPC+ +PA + H +TD PLL+ PC +R
Sbjct: 261 LLLQTPCYYRHPAITDTLLLQTSRYYRHPPITDIPLLQTPCYYR 304
>SB_40804| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1044
Score = 29.5 bits (63), Expect = 3.6
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Frame = +1
Query: 373 SCSKWWTSTSFVSFTKSAWAPK*RLIS*AMNGRAMYFVSLAATTSRIPDE---TGRPDKQ 543
SC KW+ S+SF+S + +++ P L ++N + F + T+S + E T P +
Sbjct: 113 SCDKWYHSSSFLS-SSNSFDP---LSDSSLNYPGISFPTPLGTSSPLQGESRPTRPPSLE 168
Query: 544 PCSSSDVKGPLMLQTAPRWREKT*ISS 624
S S V P+ QT + K +S+
Sbjct: 169 TLSRSSVMCPIGSQTKKGFSPKNLVSN 195
>SB_31354| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2286
Score = 29.1 bits (62), Expect = 4.8
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +1
Query: 499 TTSRIPDETGRPDKQPCSSSDVKGP 573
TT+ P E G P+K P + SD GP
Sbjct: 1661 TTTPSPSELGSPEKSPFADSDPVGP 1685
>SB_27892| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1441
Score = 29.1 bits (62), Expect = 4.8
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +1
Query: 499 TTSRIPDETGRPDKQPCSSSDVKGP 573
TT+ P E G P+K P + SD GP
Sbjct: 1351 TTTPSPSELGSPEKSPFADSDPVGP 1375
>SB_4753| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 596
Score = 28.3 bits (60), Expect = 8.4
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +1
Query: 499 TTSRIPDETGRPDKQPCSSSDVKGPLMLQTAPRW 600
TT+ P E G P+K P + SD GP P +
Sbjct: 345 TTTPSPFELGSPEKSPFADSDPVGPAASARHPHY 378
>SB_22568| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 67
Score = 28.3 bits (60), Expect = 8.4
Identities = 10/22 (45%), Positives = 18/22 (81%)
Frame = +2
Query: 488 RWRQRQAGFPMKQGVLTNSRVR 553
RWR++ +P+K+GVL+++ VR
Sbjct: 46 RWRKQSQYWPIKRGVLSSANVR 67
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,381,769
Number of Sequences: 59808
Number of extensions: 607005
Number of successful extensions: 1613
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1449
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1606
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2419355818
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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