Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30388
         (851 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132902-1|CAB81996.1|  246|Caenorhabditis elegans Hypothetical ...   116   2e-26
U53148-5|AAB37076.1|  130|Caenorhabditis elegans Ribosomal prote...    48   8e-06
Z81526-6|CAB04263.1| 2144|Caenorhabditis elegans Hypothetical pr...    29   5.5  
AL110500-6|CAB60429.1|  629|Caenorhabditis elegans Hypothetical ...    29   5.5  
AF099919-13|AAC68798.1|  636|Caenorhabditis elegans Hypothetical...    29   5.5  
AF078787-7|AAC26954.2|  518|Caenorhabditis elegans Vegf (vascula...    28   9.7  

>AL132902-1|CAB81996.1|  246|Caenorhabditis elegans Hypothetical
           protein Y71A12B.1 protein.
          Length = 246

 Score =  116 bits (280), Expect = 2e-26
 Identities = 68/153 (44%), Positives = 92/153 (60%), Gaps = 4/153 (2%)
 Frame = +3

Query: 333 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQD 512
           M+LN +YPATG QK FEV +E KLR+F+EKRM  EV  D LGDEWKGYV+R+ GGNDKQ 
Sbjct: 1   MRLNFAYPATGLQKSFEVDEEKKLRLFFEKRMSQEVAIDALGDEWKGYVVRIGGGNDKQG 60

Query: 513 SR*NR---AS*QTAVFVF*CQRATHVTDRAAMERENVNQ-FVDVLLTPISRSWLLLLCAR 680
               +    + +  + +   Q           +R++V    VD  ++ +S    L++  +
Sbjct: 61  FPMKQGILTNGRVRLLLKKGQSCYRERKNGERKRKSVRGCIVDANMSALS----LVIVKK 116

Query: 681 VPRKIPGLTDGNVPRRLGPKRASKIRKRSTLAK 779
              +I GLTD  +PR+LGPKRASKIRK   L K
Sbjct: 117 GDGEIEGLTDSVLPRKLGPKRASKIRKLFNLTK 149



 Score =  111 bits (268), Expect = 5e-25
 Identities = 56/99 (56%), Positives = 69/99 (69%)
 Frame = +2

Query: 509 GFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQ 688
           GFPMKQG+LTN RVRLL+ KG SCYR R++GERKRKSVRGCIVDAN+S L+LVIV+KG  
Sbjct: 60  GFPMKQGILTNGRVRLLLKKGQSCYRERKNGERKRKSVRGCIVDANMSALSLVIVKKGDG 119

Query: 689 ENSWID*WKCTPPSRSQTCFQNP*AFNLSKEDDVRRYVV 805
           E   +           +   +    FNL+K DDV +YV+
Sbjct: 120 EIEGLTDSVLPRKLGPKRASKIRKLFNLTKHDDVTKYVI 158


>U53148-5|AAB37076.1|  130|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 30 protein.
          Length = 130

 Score = 48.0 bits (109), Expect = 8e-06
 Identities = 21/24 (87%), Positives = 23/24 (95%)
 Frame = -2

Query: 97  LLGGKVHGSLARAGKVKGQTPKVE 26
           LLGGKVHGSLARAGKV+ QTPKV+
Sbjct: 68  LLGGKVHGSLARAGKVRAQTPKVD 91


>Z81526-6|CAB04263.1| 2144|Caenorhabditis elegans Hypothetical protein
            F33H2.5 protein.
          Length = 2144

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 14/34 (41%), Positives = 22/34 (64%)
 Frame = +2

Query: 158  RSST***SKVFITNCSKSTNAFLDLTNGLLAIAS 259
            RS+T   S VF  +CS+++N FL  T+ +L  A+
Sbjct: 2019 RSTTLFVSNVFCNSCSQASNVFLSSTDEILTCAT 2052


>AL110500-6|CAB60429.1|  629|Caenorhabditis elegans Hypothetical
           protein Y87G2A.6 protein.
          Length = 629

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 19/63 (30%), Positives = 26/63 (41%)
 Frame = -3

Query: 447 QPLLRRPCAFRKRYEACARPPLRTTSGIPLPGTKRLTS*LRSIPSIRFYNMQLHIRGQST 268
           +P+ + P   +KR E    PP         P  K  +  LRSIPS   Y      R   +
Sbjct: 2   EPVFKEPSPKKKRVE---NPPENAPDAPKKPQLKHESEFLRSIPSSSQYEKSFMHRDTIS 58

Query: 267 HVL 259
           HV+
Sbjct: 59  HVI 61


>AF099919-13|AAC68798.1|  636|Caenorhabditis elegans Hypothetical
           protein F40G9.1 protein.
          Length = 636

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
 Frame = +3

Query: 351 YPATGCQKLFEVVDEHK---LRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQ 509
           Y   G  ++FE+  E K    RIF EK +   +   ++ ++     L++ G NDK+
Sbjct: 6   YLHVGLNRIFEIAKEKKNGKFRIFLEKNVKNVIFLQEIFEKSLFLCLKINGSNDKK 61


>AF078787-7|AAC26954.2|  518|Caenorhabditis elegans Vegf (vascular
           endothelial growthfactor) receptor family protein 2
           protein.
          Length = 518

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = +3

Query: 366 CQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQ 509
           C K F+   + ++    E+++  E E  Q  D W G  LR  G  DK+
Sbjct: 272 CVKFFKNYMQEEVVQNIERKLQFEREEQQELDSWTGKSLRAEGVEDKE 319


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,762,040
Number of Sequences: 27780
Number of extensions: 427898
Number of successful extensions: 1070
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1020
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1068
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2118983636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)