Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30388
         (851 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    27   0.29 
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    27   0.29 
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   8.2  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    22   8.2  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    22   8.2  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   8.2  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 26.6 bits (56), Expect = 0.29
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3

Query: 576 EWPFDIRRRTRLFVRTPCFI 517
           EWP  +R+R  LF+   CF+
Sbjct: 406 EWPRLLRKRKELFIAIVCFV 425


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 26.6 bits (56), Expect = 0.29
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3

Query: 576 EWPFDIRRRTRLFVRTPCFI 517
           EWP  +R+R  LF+   CF+
Sbjct: 459 EWPRLLRKRKELFIAIVCFV 478


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 8/66 (12%)
 Frame = +2

Query: 488 RWRQRQAGFPMKQGVLTNSR----VRLLMSKGHSCYRPRRD----GERKRKSVRGCIVDA 643
           +W   Q GFP    ++T  R    +  L     +C+  R D     E   K     ++DA
Sbjct: 346 KWANGQTGFPWIDAIMTQLREEGWIHHLARHAVACFLTRGDLWISWEEGMKVFDELLLDA 405

Query: 644 NLSVLA 661
           + SV A
Sbjct: 406 DWSVNA 411


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +3

Query: 423 RMGAEVEADQLGDEWKGYV 479
           R+G  +++D L +  +GYV
Sbjct: 227 RIGLRIQSDSLAENVEGYV 245


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +3

Query: 657 WLLLLCARVPRKI 695
           WLL LC  VP+ I
Sbjct: 179 WLLALCLAVPQAI 191


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +1

Query: 118  QMMRAQRQDMNHLKELH 168
            Q  + Q+Q +NH  +LH
Sbjct: 1458 QQQQQQQQQLNHYPDLH 1474


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 236,525
Number of Sequences: 438
Number of extensions: 5161
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27431202
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)