Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30388
         (851 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g10360.1 68418.m01202 40S ribosomal protein S6 (RPS6B)             100   2e-21
At4g31700.1 68417.m04500 40S ribosomal protein S6 (RPS6A) riboso...    99   4e-21
At5g56670.1 68418.m07074 40S ribosomal protein S30 (RPS30C)            44   1e-04
At4g29390.1 68417.m04198 40S ribosomal protein S30 (RPS30B) RIBO...    44   1e-04
At2g19750.1 68415.m02307 40S ribosomal protein S30 (RPS30A)            44   1e-04
At1g21740.1 68414.m02721 expressed protein contains Pfam domains...    30   2.2  
At1g01730.1 68414.m00092 expressed protein                             30   2.2  
At1g13640.1 68414.m01603 phosphatidylinositol 3- and 4-kinase fa...    28   9.1  

>At5g10360.1 68418.m01202 40S ribosomal protein S6 (RPS6B)
          Length = 249

 Score = 99.5 bits (237), Expect = 2e-21
 Identities = 58/117 (49%), Positives = 74/117 (63%), Gaps = 4/117 (3%)
 Frame = +2

Query: 509 GFPMKQGVLTNSRVRLLMSKGHSCYRP--RRDGERKRKSVRGCIVDANLSVLALVIVRKG 682
           GFPMKQGVLT  RVRLL+ +G  C+R   RR GER+RKSVRGCIV  +LSVL LVIV+KG
Sbjct: 60  GFPMKQGVLTPGRVRLLLHRGTPCFRGHGRRTGERRRKSVRGCIVSPDLSVLNLVIVKKG 119

Query: 683 AQENSWID*WKCTPPSRSQTCFQNP*AFNLSKEDDVRRYV--VKRVLPAKEGKENAK 847
             +   +   +       +   +    FNL KEDDVR+YV   +R    K+GK+ +K
Sbjct: 120 VSDLPGLTDTEKPRMRGPKRASKIRKLFNLGKEDDVRKYVNTYRRTFTNKKGKKVSK 176



 Score = 96.7 bits (230), Expect = 2e-20
 Identities = 59/155 (38%), Positives = 80/155 (51%), Gaps = 5/155 (3%)
 Frame = +3

Query: 333 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQD 512
           MK NV+ P TGCQK  E+ D+ KLR F++KR+  EV  D LG+E+KGYV ++ GG DKQ 
Sbjct: 1   MKFNVANPTTGCQKKLEIDDDQKLRAFFDKRLSQEVSGDALGEEFKGYVFKIMGGCDKQG 60

Query: 513 SR*NRAS*QTAVFVF*CQRAT-----HVTDRAAMERENVNQFVDVLLTPISRSWLLLLCA 677
               +             R T     H        R++V      +++P      L++  
Sbjct: 61  FPMKQGVLTPGRVRLLLHRGTPCFRGHGRRTGERRRKSVR---GCIVSPDLSVLNLVIVK 117

Query: 678 RVPRKIPGLTDGNVPRRLGPKRASKIRKRSTLAKK 782
           +    +PGLTD   PR  GPKRASKIRK   L K+
Sbjct: 118 KGVSDLPGLTDTEKPRMRGPKRASKIRKLFNLGKE 152


>At4g31700.1 68417.m04500 40S ribosomal protein S6 (RPS6A) ribosomal
           protein S6, Arabidopsis thaliana, PID:g2662469
          Length = 250

 Score = 98.7 bits (235), Expect = 4e-21
 Identities = 59/117 (50%), Positives = 73/117 (62%), Gaps = 4/117 (3%)
 Frame = +2

Query: 509 GFPMKQGVLTNSRVRLLMSKGHSCYRP--RRDGERKRKSVRGCIVDANLSVLALVIVRKG 682
           GFPMKQGVLT  RVRLL+ +G  C+R   RR GER+RKSVRGCIV  +LSVL LVIV+KG
Sbjct: 60  GFPMKQGVLTPGRVRLLLHRGTPCFRGHGRRTGERRRKSVRGCIVSPDLSVLNLVIVKKG 119

Query: 683 AQENSWID*WKCTPPSRSQTCFQNP*AFNLSKEDDVRRYV--VKRVLPAKEGKENAK 847
             +   +   +       +   +    FNL KEDDVR YV   +R    K+GKE +K
Sbjct: 120 ENDLPGLTDTEKPRMRGPKRASKIRKLFNLKKEDDVRTYVNTYRRKFTNKKGKEVSK 176



 Score = 98.3 bits (234), Expect = 6e-21
 Identities = 60/155 (38%), Positives = 80/155 (51%), Gaps = 5/155 (3%)
 Frame = +3

Query: 333 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQD 512
           MK NV+ P TGCQK  E+ D+ KLR FY+KR+  EV  D LG+E+KGYV ++ GG DKQ 
Sbjct: 1   MKFNVANPTTGCQKKLEIDDDQKLRAFYDKRISQEVSGDALGEEFKGYVFKIKGGCDKQG 60

Query: 513 SR*NRAS*QTAVFVF*CQRAT-----HVTDRAAMERENVNQFVDVLLTPISRSWLLLLCA 677
               +             R T     H        R++V      +++P      L++  
Sbjct: 61  FPMKQGVLTPGRVRLLLHRGTPCFRGHGRRTGERRRKSVR---GCIVSPDLSVLNLVIVK 117

Query: 678 RVPRKIPGLTDGNVPRRLGPKRASKIRKRSTLAKK 782
           +    +PGLTD   PR  GPKRASKIRK   L K+
Sbjct: 118 KGENDLPGLTDTEKPRMRGPKRASKIRKLFNLKKE 152


>At5g56670.1 68418.m07074 40S ribosomal protein S30 (RPS30C) 
          Length = 62

 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 19/20 (95%), Positives = 20/20 (100%)
 Frame = -2

Query: 88 GKVHGSLARAGKVKGQTPKV 29
          GKVHGSLARAGKV+GQTPKV
Sbjct: 2  GKVHGSLARAGKVRGQTPKV 21


>At4g29390.1 68417.m04198 40S ribosomal protein S30 (RPS30B)
          RIBOSOMAL PROTEIN S30 - Arabidopsis
          thaliana,PID:e1358183
          Length = 62

 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 19/20 (95%), Positives = 20/20 (100%)
 Frame = -2

Query: 88 GKVHGSLARAGKVKGQTPKV 29
          GKVHGSLARAGKV+GQTPKV
Sbjct: 2  GKVHGSLARAGKVRGQTPKV 21


>At2g19750.1 68415.m02307 40S ribosomal protein S30 (RPS30A)
          Length = 62

 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 19/20 (95%), Positives = 20/20 (100%)
 Frame = -2

Query: 88 GKVHGSLARAGKVKGQTPKV 29
          GKVHGSLARAGKV+GQTPKV
Sbjct: 2  GKVHGSLARAGKVRGQTPKV 21


>At1g21740.1 68414.m02721 expressed protein contains Pfam domains,
           PF04782: Protein of unknown function (DUF632) and
           PF04783: Protein of unknown function (DUF630)
          Length = 953

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +3

Query: 318 GLTAVMKLNVSYPATGCQKLF-EVVDEHKLRIFYEKRMGAEVEADQLGDE 464
           GLT  +   +       +KL+ EV DE KLR+ YE++     + D LG E
Sbjct: 585 GLTGNLSATLEQLYAWEKKLYKEVKDEEKLRVVYEEKCRTLKKLDSLGAE 634


>At1g01730.1 68414.m00092 expressed protein
          Length = 224

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 18/60 (30%), Positives = 29/60 (48%)
 Frame = -3

Query: 390 PPLRTTSGIPLPGTKRLTS*LRSIPSIRFYNMQLHIRGQSTHVLDAMARSPLVRSRNAFV 211
           PP   T+     G KR       I S  +Y M+L ++    HVL+ + R+P +R+  A +
Sbjct: 52  PPSTVTTDPSSRGRKRALEANLQIESSNYYKMRLLVKDLRPHVLEVL-RTPDLRNSKAVI 110


>At1g13640.1 68414.m01603 phosphatidylinositol 3- and 4-kinase
           family protein low similarity to phosphatidylinositol
           4-kinase type-II beta [Homo sapiens] GI:20159767;
           contains Pfam profile PF00454: Phosphatidylinositol 3-
           and 4-kinase
          Length = 622

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
 Frame = -2

Query: 355 GYETFNFMTAVNPVDKILQYAVAYQRAIDTRPGRNGQESIGQIKERIRTLAAVGDED--L 182
           G   F F    N +D +              P  NG+ S+G++KE I       +E+  L
Sbjct: 465 GETEFQFDIDYNELDSVYGSETETDEFFAKNPFSNGRSSLGELKESIAEEEEDDEEEAKL 524

Query: 181 TLSL 170
           TLSL
Sbjct: 525 TLSL 528


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,748,554
Number of Sequences: 28952
Number of extensions: 399197
Number of successful extensions: 1033
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 998
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1027
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1980143200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)