Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30387
         (778 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q0N402 Cluster: Ac115-like protein; n=1; Clanis bilinea...    34   3.4  
UniRef50_UPI0000E495C7 Cluster: PREDICTED: hypothetical protein;...    34   4.6  
UniRef50_Q8IM41 Cluster: Putative uncharacterized protein; n=1; ...    34   4.6  
UniRef50_Q5UQ98 Cluster: Putative ATP-dependent RNA helicase L53...    33   6.0  

>UniRef50_Q0N402 Cluster: Ac115-like protein; n=1; Clanis bilineata
           nucleopolyhedrosis virus|Rep: Ac115-like protein -
           Clanis bilineata nucleopolyhedrosis virus
          Length = 205

 Score = 34.3 bits (75), Expect = 3.4
 Identities = 10/22 (45%), Positives = 19/22 (86%)
 Frame = +3

Query: 198 RNLTLNCNIARIPCLSNKNCMD 263
           RN T++C++ R+PC++N+ C+D
Sbjct: 50  RNGTVDCSLTRLPCITNQQCID 71


>UniRef50_UPI0000E495C7 Cluster: PREDICTED: hypothetical protein; n=1;
            Strongylocentrotus purpuratus|Rep: PREDICTED:
            hypothetical protein - Strongylocentrotus purpuratus
          Length = 1570

 Score = 33.9 bits (74), Expect = 4.6
 Identities = 18/54 (33%), Positives = 29/54 (53%)
 Frame = -3

Query: 461  CLLLNNTFQIRMCVSITLICQSSIKKCGQQQKYLHSFFLVNYLPNYCFSDHLFF 300
            C+L+ + +Q+ +CV+I    Q +I    QQQ+ L  F   N L  +   DHL +
Sbjct: 1496 CVLMGSDYQVYLCVAILRHMQPTILHHTQQQR-LQIFLKENSLEGFHVGDHLAY 1548


>UniRef50_Q8IM41 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium falciparum 3D7|Rep: Putative uncharacterized
           protein - Plasmodium falciparum (isolate 3D7)
          Length = 1025

 Score = 33.9 bits (74), Expect = 4.6
 Identities = 24/98 (24%), Positives = 50/98 (51%)
 Frame = -3

Query: 677 RDESQNVPCRHIEIDNYKSLSVGGP*LSIY*MYIIKH*KCIFRNGKTEIIDT*SKNFLIV 498
           ++ + N   +H +IDN  S++ G P + +Y + +    + ++ + + +II+       I+
Sbjct: 120 KENTINEQIQH-DIDNKNSIN-GNPDMHLYELILTNEKRWLYFDIEYDIINNYENKESIL 177

Query: 497 FFLHVYSPVTEKCLLLNNTFQIRMCVSITLICQSSIKK 384
           F   +     E CL + + F I++C++  LI  SS  K
Sbjct: 178 FIFLI-----EFCLFIYSNFNIKICLNDILILDSSTNK 210


>UniRef50_Q5UQ98 Cluster: Putative ATP-dependent RNA helicase L538;
           n=1; Acanthamoeba polyphaga mimivirus|Rep: Putative
           ATP-dependent RNA helicase L538 - Mimivirus
          Length = 445

 Score = 33.5 bits (73), Expect = 6.0
 Identities = 18/65 (27%), Positives = 33/65 (50%)
 Frame = +3

Query: 465 FGYGRIDM*KKNNQKVFTSCVYYLGFSITKYTFLMFYNVHLIYGELWSAYRQAFVVVDLY 644
           F Y  I +  K+++K FT  +   G  I+++TF  +  + +I     + ++   V+VD  
Sbjct: 44  FDYPIIIIGPKSSKKAFTDNIEKAGMDISRFTFYTYTKIKMILESDITIFKNMSVIVDEA 103

Query: 645 MSTRN 659
            S RN
Sbjct: 104 HSLRN 108


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 761,462,551
Number of Sequences: 1657284
Number of extensions: 14796160
Number of successful extensions: 32170
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 31025
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32158
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 65438977305
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)