Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30387
         (778 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0286 + 13915705-13915984,13916478-13917062,13918188-139186...    31   1.0  
02_05_0226 + 26971851-26972034,26972734-26972834,26972876-269729...    29   4.1  
12_02_0957 + 24807261-24807311,24807436-24807773,24808727-248089...    28   7.2  
01_01_0678 - 5209468-5209534,5209588-5209755,5212135-5212292           28   7.2  
03_01_0300 + 2350232-2352274,2352349-2352669,2352752-2352838,235...    28   9.5  

>04_03_0286 +
           13915705-13915984,13916478-13917062,13918188-13918661,
           13918963-13920208,13920282-13920297
          Length = 866

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = -3

Query: 563 KCIFRNGKTEIIDT*SKNFLIVFFLHVYS 477
           + +F+NG TEIID+ S  +L V F H  S
Sbjct: 77  RLLFKNGTTEIIDSPSTEYLDVMFSHSIS 105


>02_05_0226 +
           26971851-26972034,26972734-26972834,26972876-26972978,
           26973335-26973477,26973525-26973605,26973929-26974015,
           26974097-26974239,26974746-26974896,26974973-26975095,
           26975362-26975445,26975531-26975718,26976726-26976900,
           26977008-26977129,26977231-26977310,26977532-26977590,
           26977921-26978075,26978680-26978858,26980050-26980162,
           26980243-26980413,26980552-26980680,26980756-26980856,
           26980942-26981059,26981739-26981818,26983230-26983302,
           26983865-26983950,26984025-26984076,26984221-26984352,
           26984560-26984628,26984912-26985004,26985806-26985901,
           26986710-26986808,26986894-26986986,26987459-26987608,
           26988391-26988549
          Length = 1323

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +3

Query: 63  LADFWRQGICMHRRLCVVYVLIFCGFYI 146
           +A FW  GI  H   CV + ++F G  +
Sbjct: 795 IAQFWSSGIASHEPTCVDFEIVFHGISV 822


>12_02_0957 +
           24807261-24807311,24807436-24807773,24808727-24808927,
           24809024-24809069,24809284-24809600,24809949-24810072,
           24810465-24810537,24810968-24811173,24811384-24811651,
           24811780-24811877,24812116-24812379
          Length = 661

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
 Frame = -2

Query: 177 ITLYFICTFNIYKNHKKLT---HTRRRGVCA 94
           + ++ IC F + KN KKLT   H  R+G C+
Sbjct: 631 LEIHDICLFQLMKNKKKLTMTVHIIRKGECS 661


>01_01_0678 - 5209468-5209534,5209588-5209755,5212135-5212292
          Length = 130

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = -1

Query: 739 HP-TCTFYVLRRGISHSAYGKNETS 668
           HP +C F    +GISHS+  KN TS
Sbjct: 84  HPFSCVFSTDEKGISHSSRAKNPTS 108


>03_01_0300 +
           2350232-2352274,2352349-2352669,2352752-2352838,
           2353031-2353708,2353800-2353964,2354139-2354433,
           2354581-2354795,2354885-2355190,2355269-2355332,
           2355426-2355665,2355783-2355886
          Length = 1505

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = -3

Query: 734 NMYILRLTSWHLTFRLR*ERDESQNVPCRHIEIDNYKSLSV 612
           NM IL+L +W   +RL+ E  E +NV C+ +    Y   +V
Sbjct: 494 NMRILKLQAWEDRYRLKLE--EMRNVECKWLRWALYSQAAV 532


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,883,776
Number of Sequences: 37544
Number of extensions: 381922
Number of successful extensions: 742
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 727
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 742
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)