Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30387
         (778 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z27078-8|CAH04706.2| 1446|Caenorhabditis elegans Hypothetical pr...    30   2.1  
Z27078-2|CAA81588.3|  788|Caenorhabditis elegans Hypothetical pr...    30   2.1  
Z81533-12|CAB04333.2|  356|Caenorhabditis elegans Hypothetical p...    28   8.6  

>Z27078-8|CAH04706.2| 1446|Caenorhabditis elegans Hypothetical protein
            K04H4.2c protein.
          Length = 1446

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +1

Query: 28   PNFGRSPLINFFSPIFGAKGYACTDASAS 114
            PN+GR PL ++  P FG    +C+D S S
Sbjct: 1251 PNYGR-PLHSYMPPRFGGPSSSCSDGSLS 1278


>Z27078-2|CAA81588.3|  788|Caenorhabditis elegans Hypothetical
           protein K04H4.2b protein.
          Length = 788

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +1

Query: 28  PNFGRSPLINFFSPIFGAKGYACTDASAS 114
           PN+GR PL ++  P FG    +C+D S S
Sbjct: 593 PNYGR-PLHSYMPPRFGGPSSSCSDGSLS 620


>Z81533-12|CAB04333.2|  356|Caenorhabditis elegans Hypothetical
           protein F36G9.1 protein.
          Length = 356

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 12/52 (23%), Positives = 26/52 (50%)
 Frame = -3

Query: 539 TEIIDT*SKNFLIVFFLHVYSPVTEKCLLLNNTFQIRMCVSITLICQSSIKK 384
           T ++D  S  + + FF+ ++    E   L+N T    +C  I+   Q ++++
Sbjct: 291 TYLVDFLSLGYRLAFFIILFGAFCEFVSLINGTLHFLLCAFISTQYQKTVRE 342


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,489,128
Number of Sequences: 27780
Number of extensions: 398648
Number of successful extensions: 984
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 955
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 984
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1872168044
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)