Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30387
         (778 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          23   2.4  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      23   2.4  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   4.2  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    22   5.5  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    22   5.5  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   9.7  

>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +2

Query: 89  MHAQTPLRRVCVNFLWFLYILNVH 160
           M+ +   RR C+N+  F Y +N++
Sbjct: 485 MYLRLKARRACMNYERFTYKININ 508


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +2

Query: 89  MHAQTPLRRVCVNFLWFLYILNVH 160
           M+ +   RR C+N+  F Y +N++
Sbjct: 485 MYLRLKARRACMNYERFTYKININ 508


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +2

Query: 509 SFYFMCLLSRFFHYEIY 559
           SFY  C++  F +Y I+
Sbjct: 351 SFYIPCIIMVFLYYNIF 367


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 7/24 (29%), Positives = 14/24 (58%)
 Frame = +3

Query: 507 KVFTSCVYYLGFSITKYTFLMFYN 578
           KVF +C++   + I     ++FY+
Sbjct: 218 KVFVTCIFIWAYVIPLIFIILFYS 241


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 7/24 (29%), Positives = 14/24 (58%)
 Frame = +3

Query: 507 KVFTSCVYYLGFSITKYTFLMFYN 578
           KVF +C++   + I     ++FY+
Sbjct: 218 KVFVTCIFIWAYVIPLIFIILFYS 241


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +2

Query: 509 SFYFMCLLSRFFHYEIY 559
           SFY   L+  FF++ IY
Sbjct: 255 SFYIPMLVMLFFYWRIY 271


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 224,186
Number of Sequences: 438
Number of extensions: 4703
Number of successful extensions: 14
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24396777
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)