Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30387
         (778 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g35995.1 68418.m04334 F-box family protein contains F-box dom...    28   6.0  
At3g05390.1 68416.m00589 expressed protein ; expression supporte...    28   7.9  
At1g48880.1 68414.m05476 hypothetical protein                          28   7.9  

>At5g35995.1 68418.m04334 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 455

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 18/66 (27%), Positives = 30/66 (45%)
 Frame = +2

Query: 416 LTRTFLFGKYCLIEGIFRLRANRHVKKKQSKSFYFMCLLSRFFHYEIYIFNVL*CTFNIW 595
           LT TF FG+   +    R     H+     ++FY+ C     F   I++ ++     N W
Sbjct: 266 LTNTFDFGEVTNLVSAIRNVKTLHLSSSSLEAFYYRCYTMPVFDKLIHL-SIESDKENGW 324

Query: 596 RAMVRL 613
           +A+ RL
Sbjct: 325 QALPRL 330


>At3g05390.1 68416.m00589 expressed protein ; expression supported
           by MPSS
          Length = 463

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/53 (28%), Positives = 25/53 (47%)
 Frame = -2

Query: 621 PVGRRTIALHILNVHYKTLKMYIS*WKNRDNRHMK*KLFDCFFFTCLFARNRK 463
           P+ RR         + K   +  S WK  D+R+++   + C  F CL ++N K
Sbjct: 220 PLPRRRCLTRASMTYQKPYPINESLWKLPDDRNVRWGNYQCRNFACLSSKNPK 272


>At1g48880.1 68414.m05476 hypothetical protein
          Length = 485

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = -3

Query: 512 NFLIVFFLHVYSPVTEKCLLLNNTFQIRMCVSITLICQ-SSIKKCGQQQK 366
           N +++FFL      +     L N+  I +C+ I LIC+ S +  C  ++K
Sbjct: 432 NEILLFFLFRQPVRSCSSSPLENSISILLCLKILLICRFSEVDNCNIEKK 481


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,713,220
Number of Sequences: 28952
Number of extensions: 336491
Number of successful extensions: 647
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 647
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1736283200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)