Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30385
         (660 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein S6|Schizo...    93   2e-20
SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein S6|Schizosacch...    93   3e-20
SPCC965.11c |||amino acid transporter |Schizosaccharomyces pombe...    28   1.0  
SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase Ubp22|Sch...    26   5.5  
SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subuni...    25   7.3  
SPAC31A2.03 |mrpl11||mitochondrial ribosomal protein subunit L11...    25   7.3  
SPBC1E8.03c |||conserved fungal protein|Schizosaccharomyces pomb...    25   9.7  

>SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score = 93.5 bits (222), Expect = 2e-20
 Identities = 46/68 (67%), Positives = 57/68 (83%), Gaps = 1/68 (1%)
 Frame = -1

Query: 453 IVRKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKR-VLPAKEGKENA 277
           IV++G Q+IPGLTD  VP+RLGPKRASKIR+ FNLSKEDDVR++V++R V+P KEGK   
Sbjct: 113 IVKQGEQDIPGLTDVTVPKRLGPKRASKIRRFFNLSKEDDVRQFVIRREVVPKKEGK--- 169

Query: 276 KPRHKAPR 253
           KP  KAP+
Sbjct: 170 KPYTKAPK 177


>SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score = 93.1 bits (221), Expect = 3e-20
 Identities = 45/68 (66%), Positives = 57/68 (83%), Gaps = 1/68 (1%)
 Frame = -1

Query: 453 IVRKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKR-VLPAKEGKENA 277
           I+++G Q+IPGLTD  VP+RLGPKRASKIR+ FNLSKEDDVR++V++R V+P KEGK   
Sbjct: 113 IIKQGEQDIPGLTDVTVPKRLGPKRASKIRRFFNLSKEDDVRQFVIRREVVPKKEGK--- 169

Query: 276 KPRHKAPR 253
           KP  KAP+
Sbjct: 170 KPYTKAPK 177


>SPCC965.11c |||amino acid transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 537

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +1

Query: 241 LASGSRCLMSGFSIFFSFLGWEHAFDDITTYII 339
           L+SGS+ L S  +I     GW HA D +   I+
Sbjct: 292 LSSGSKTLKSPMTIAIMNAGWNHAGDFVNAVIL 324


>SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase
           Ubp22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1108

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -3

Query: 580 QKANQPESLHLVVLYQEKXRLYDFLKLPRTIT 485
           ++AN P++  L +  + K  + DFL+L +T T
Sbjct: 734 ERANLPKNTPLNIYEEIKPGMVDFLRLEKTFT 765


>SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subunit
           Rpa2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1227

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 25/96 (26%), Positives = 35/96 (36%), Gaps = 2/96 (2%)
 Frame = +1

Query: 316 DDITTYIIFFAKVEQLTDFGSTFGT*TAGYISISQSRNFLGTLAHNNLVPNSARVVTLLC 495
           +DI T + +F     L            GY  +++  NF   L+H  +V   A    L  
Sbjct: 484 NDIGTKLQYFLSTGNLVSNTGLDLQQATGYTVVAEKLNFYRFLSHFRMVHRGAFFAELKT 543

Query: 496 AGVSK--NHIIXFFPDIKQQDEDSPAGLLSDAALLC 597
             V K       F   +   D  SP GLL+  A  C
Sbjct: 544 TTVRKLLPEAWGFMCPVHTPD-GSPCGLLNHLARKC 578


>SPAC31A2.03 |mrpl11||mitochondrial ribosomal protein subunit
           L11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 216

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +1

Query: 412 ISQSRNFLGTLAHNNLVPNSAR 477
           I +S NFL  L HNNL+P  A+
Sbjct: 32  IQESPNFL-ILQHNNLLPREAK 52


>SPBC1E8.03c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 477

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +2

Query: 488 YCAREFQKII*SXFFLI*NNKMKTLRLVCFLMLLCYVVAKK 610
           YC R    +    + LI    MK L L+  L+L C  V ++
Sbjct: 14  YCKRLLNSVTYMMYPLIRKRTMKKLLLIVGLLLACSTVMRR 54


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,476,081
Number of Sequences: 5004
Number of extensions: 46832
Number of successful extensions: 105
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)