Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30385
(660 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1309 + 25669394-25669399,25669520-25669584,25670543-256706... 80 2e-15
03_03_0207 - 15455163-15455389,15455623-15455895,15455991-154560... 78 5e-15
06_01_0288 - 2106113-2109055 31 1.1
01_02_0020 - 10269252-10269314,10269442-10269483,10269759-102702... 29 3.3
02_01_0295 - 1973115-1973404,1974138-1974663 29 4.3
02_05_0956 - 33064104-33066425 28 5.7
03_02_0109 + 5671418-5671631,5675610-5675690,5676249-5676340,567... 28 7.6
>07_03_1309 +
25669394-25669399,25669520-25669584,25670543-25670600,
25670683-25670791,25670872-25671144,25671348-25671589
Length = 250
Score = 79.8 bits (188), Expect = 2e-15
Identities = 39/63 (61%), Positives = 47/63 (74%), Gaps = 2/63 (3%)
Frame = -1
Query: 456 VIVRKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYV--VKRVLPAKEGKE 283
VIV+KG ++PGLTD PR GPKRASKIRKLFNLSK+DDVR+YV +R K GK+
Sbjct: 114 VIVKKGENDLPGLTDTEKPRMRGPKRASKIRKLFNLSKDDDVRKYVNTYRRTFTTKNGKK 173
Query: 282 NAK 274
+K
Sbjct: 174 VSK 176
Score = 43.2 bits (97), Expect = 2e-04
Identities = 25/53 (47%), Positives = 28/53 (52%)
Frame = -3
Query: 253 IQRLVTPVVLQXXXXXXXXXXXXXXXXKSSEAEYAKLLAQRKKESKVRRQEEI 95
IQRLVTP+ LQ KS AEY KLLAQR KE + RR E +
Sbjct: 180 IQRLVTPLTLQRKRARIADKKKRIAKKKSEAAEYQKLLAQRLKEQRERRSESL 232
>03_03_0207 -
15455163-15455389,15455623-15455895,15455991-15456099,
15456186-15456243,15457002-15457066,15457190-15457195
Length = 245
Score = 78.2 bits (184), Expect = 5e-15
Identities = 38/63 (60%), Positives = 47/63 (74%), Gaps = 2/63 (3%)
Frame = -1
Query: 456 VIVRKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYV--VKRVLPAKEGKE 283
VIV+KG ++PGLTD PR GPKRASKIRKLFNL+K+DDVR+YV +R K GK+
Sbjct: 114 VIVKKGDNDLPGLTDTEKPRMRGPKRASKIRKLFNLAKDDDVRKYVNTYRRTFTTKNGKK 173
Query: 282 NAK 274
+K
Sbjct: 174 VSK 176
Score = 43.2 bits (97), Expect = 2e-04
Identities = 25/53 (47%), Positives = 28/53 (52%)
Frame = -3
Query: 253 IQRLVTPVVLQXXXXXXXXXXXXXXXXKSSEAEYAKLLAQRKKESKVRRQEEI 95
IQRLVTP+ LQ KS AEY KLLAQR KE + RR E +
Sbjct: 180 IQRLVTPLTLQRKRARIAQKKQRIAKKKSEAAEYQKLLAQRLKEQRERRSESL 232
>06_01_0288 - 2106113-2109055
Length = 980
Score = 30.7 bits (66), Expect = 1.1
Identities = 22/96 (22%), Positives = 43/96 (44%), Gaps = 1/96 (1%)
Frame = +1
Query: 253 SRCLMSGFSIFFSFLGWEHAFDDITTYIIFFAKVEQLTDFGSTFGT*TAGYISISQSRNF 432
S C+ G+++ + + D TY+ ++L + ST+ +I +S+++ F
Sbjct: 714 SMCVDHGYAVMIPSAKFATVYTDGRTYLAIHVYTDKLESYSSTYDY-PLNFIDLSRNQ-F 771
Query: 433 LGTLAHNNLVPNSARVVT-LLCAGVSKNHIIXFFPD 537
G +P ++ LL +S NHI+ PD
Sbjct: 772 TGE------IPREIGAISFLLALNLSGNHILGSIPD 801
>01_02_0020 -
10269252-10269314,10269442-10269483,10269759-10270244,
10270338-10270421,10270491-10270556,10270718-10270810,
10270901-10271987,10273338-10273362,10273881-10273899
Length = 654
Score = 29.1 bits (62), Expect = 3.3
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -2
Query: 140 CTEKEGIQGASPGRDQTQAVSFN 72
C KE IQGA+PG Q Q + N
Sbjct: 599 CLNKEAIQGANPGDSQMQIIMQN 621
>02_01_0295 - 1973115-1973404,1974138-1974663
Length = 271
Score = 28.7 bits (61), Expect = 4.3
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Frame = -1
Query: 462 HQVIVRKGAQEIPGLT--DGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKRVLPAKEG 289
H+ + GA PG +P R+G + +KIRKL + ++D++ ++K +P K G
Sbjct: 195 HRALGSIGAGTTPGRVYKGKKMPGRMGGTK-TKIRKLKIVKIDNDLKVVMIKGAVPGKPG 253
>02_05_0956 - 33064104-33066425
Length = 773
Score = 28.3 bits (60), Expect = 5.7
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +1
Query: 295 LGWEHAFDDITTYIIFFAKV 354
+G EHA DD++TYII A V
Sbjct: 23 VGVEHATDDVSTYIIHVAHV 42
>03_02_0109 +
5671418-5671631,5675610-5675690,5676249-5676340,
5676433-5676513,5676594-5676691,5676872-5676953,
5677050-5677088
Length = 228
Score = 27.9 bits (59), Expect = 7.6
Identities = 18/61 (29%), Positives = 31/61 (50%)
Frame = +1
Query: 265 MSGFSIFFSFLGWEHAFDDITTYIIFFAKVEQLTDFGSTFGT*TAGYISISQSRNFLGTL 444
++GF +FFSFLG FD +I + L+ G T G + ++ +N+ GT+
Sbjct: 104 LTGFGVFFSFLGIIFFFD---KGLIAMGNILFLSGLGLTIGLKSTMQF-FTKPKNYKGTI 159
Query: 445 A 447
+
Sbjct: 160 S 160
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,389,016
Number of Sequences: 37544
Number of extensions: 320072
Number of successful extensions: 816
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 799
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 814
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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